Locus 7600

Sequence ID 3R_DroMel_CAF1
Location 20,374,043 – 20,374,158
Length 115
Max. P 0.544512
window12261

overview

Window 1

Location 20,374,043 – 20,374,158
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.94
Mean single sequence MFE -35.05
Consensus MFE -23.29
Energy contribution -23.60
Covariance contribution 0.31
Combinations/Pair 1.15
Mean z-score -1.74
Structure conservation index 0.66
SVM decision value 0.02
SVM RNA-class probability 0.544512
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20374043 115 - 27905053
ACUUGUAAAUGAGAUAA--AAUCUACGCUGUGUUGUUGGGUAAUUAGCAAAACAGUUUGAGAGCCACUGCCGGAUGACGCACACGGGCGUAAUAAACCCG---GUUAAGUGAGCAGCCAU
.(((......)))....--..(((..(((((.(((((((....))))))).)))))...)))(((((((((((...((((......)))).......)))---))..)))).))...... ( -31.70)
>DroSec_CAF1 15342 115 - 1
ACUUGCAAAUGAGAUAC--AAUCUAGGCUGUGUUGUUGGGUAAUUAGCAAAACAGUUUGAGAGCCACUGCCGGAUGACGCACACGGGCGUAAUAAACCCG---UGGAAGUGAGCAGCCAU
....((...........--..((((((((((.(((((((....))))))).))))))).)))((((((((.(.....))).((((((.........))))---))..)))).)).))... ( -32.70)
>DroEre_CAF1 15987 115 - 1
ACUGGCAAAUGAGAUAA--AAUCUAGGCUGUGUUGUUGGGUAAUUAGCAAAACAGUUUGAGAGCCACUGCCGGAUGACGCACACGGGCGUAAUAAACCCC---GGAAAGUGGGCAGCCAU
..((((...........--..((((((((((.(((((((....))))))).))))))).))).(((((.((((...((((......))))........))---))..)))))...)))). ( -37.10)
>DroAna_CAF1 15976 117 - 1
ACUUGCAAAUGAGAUAAAAAAUCUAGGCUGUGU---UGAGUAAUUAGCGUAACAGUUUGGGAGCCACUGCCGGAUGACGCACACGGGCGUAAAAUAUCCUGCCUGGCAGUGUGCAGUCAU
............(((......((((((((((((---(((....)))))...)))))))))).((((((((((((((((((......))))....))))).....))))))).)).))).. ( -38.70)
>consensus
ACUUGCAAAUGAGAUAA__AAUCUAGGCUGUGUUGUUGGGUAAUUAGCAAAACAGUUUGAGAGCCACUGCCGGAUGACGCACACGGGCGUAAUAAACCCG___GGGAAGUGAGCAGCCAU
....((...............((((((((((.(((((((....))))))).))))))).)))(((((((((.(.((.....))).)))((.....))..........)))).)).))... (-23.29 = -23.60 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:49 2006