Locus 76

Sequence ID 3R_DroMel_CAF1
Location 498,988 – 499,088
Length 100
Max. P 0.821054
window133

overview

Window 3

Location 498,988 – 499,088
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 76.29
Mean single sequence MFE -26.08
Consensus MFE -13.58
Energy contribution -15.54
Covariance contribution 1.96
Combinations/Pair 1.07
Mean z-score -1.95
Structure conservation index 0.52
SVM decision value 0.68
SVM RNA-class probability 0.821054
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 498988 100 - 27905053
GAAAGAAACCCGAAGCCAAAGCGGAAGUUAAUGCUGCCAAAAGCUGAGACGGUGGUUAUGAGGGGAAACUUUCGUUGCUAUCGGCUGAAUCACAACGCCA
.............((((..(((....)))...(((......)))......((((((.(((((((....))))))).)))))))))).............. ( -29.20)
>DroSec_CAF1 27007 98 - 1
GAAAGAAACCCAAAGUCACAGCG--AUUUAAUGCUACCAAAAACUGCGACGUUGGUAAUGAGGGGAAACUUUCGUUGCUAUCGGCUGAAUCACGAGACCA
..............(((...(.(--(((((.(((...........))).((.((((((((((((....)))))))))))).))..)))))).)..))).. ( -27.00)
>DroSim_CAF1 27044 98 - 1
GAAAGAAAACCAAAUUCACAGCG--AUUUAAUGCUACCAAAAACUGCGACGGUGGUAAUGAGGGGAAACUUUCGUUGCUAUCGGCUGAAUCACGAGACCA
..................((((.--......(((...........))).(((((((((((((((....)))))))))))))))))))............. ( -29.90)
>DroEre_CAF1 30150 93 - 1
GAAA-AAACCCAAAGUCAAAGCG--GUGUAAUGCUACCAAAAUCUGCGACGGUGGUAGAGAGGGAAAACUUUCGU----AUCAGCCGAAUCACAACGCCA
....-.................(--((((..(((...........))).(((((((((((((......))))).)----)))).))).......))))). ( -21.80)
>DroYak_CAF1 46000 76 - 1
G------------------------GCUUGAUGCUACCAAAAACUGCGACGGUAGUAGGGAGGGUAAACUUUCGUUGGAAUCGGCUGAAUCACAACGCCG
(------------------------((....(((((((............)))))))(..((......))..)((((((.((....)).)).))))))). ( -22.50)
>consensus
GAAAGAAACCCAAAGUCAAAGCG__AUUUAAUGCUACCAAAAACUGCGACGGUGGUAAUGAGGGGAAACUUUCGUUGCUAUCGGCUGAAUCACAACGCCA
.................................................(((((((((((((((....)))))))))))))))................. (-13.58 = -15.54 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:27 2006