| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,371,125 – 20,371,233 |
| Length | 108 |
| Max. P | 0.852207 |
| Location | 20,371,125 – 20,371,233 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.66 |
| Mean single sequence MFE | -17.09 |
| Consensus MFE | -11.71 |
| Energy contribution | -11.50 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20371125 108 - 27905053 UGAAAGGAUAAACAACAGCAACAACAGUGGAGCAGCAAAAAAAAAAAACAAAAUAAUAACAGUUGAAGGCUUCAUGGAAACGCGCUGGCUUUCAUAAAUAUUUCAAAU (((((((.....)..((((.......(((((((..(((........................)))...)))))))(....)..)))).)))))).............. ( -18.96) >DroSec_CAF1 12574 99 - 1 AUAAAGGAUAAACAACAGCAACAACAGUGGAGCAGCAAAAAAAAAAA---------GAACAGUUGAAGGCUUCAUGGAAACGCGCUGGCUUUCAUAAAUAUUUCAAAU ...............((((.......(((((((..(((.........---------......)))...)))))))(....)..))))..................... ( -16.86) >DroSim_CAF1 13638 95 - 1 AUAAAGGAUAAACAACAGCAACAACAGUGGAGC-GCAAAAAAAAA------------AACAGUUGAAGGCUUCAUGGAAACGCGCUGGCUUUCAUAAAUAUUUCAAAU ...............((((.......(((((((-.(((.......------------.....)))...)))))))(....)..))))..................... ( -15.60) >DroEre_CAF1 12515 104 - 1 AUAAAGGAUAAGCAGCAGCAACAACAGAGGAGCAGCAGAAAAA-UAAAAAAA---AAAACAGUUGAAGGCUUCAUGGAAGCGCGCUGGUUUUCAUAAAUAUUUCAAAU ......((.((.((((.((.............((((.......-........---......))))...(((((...))))))))))).)).))............... ( -17.00) >DroYak_CAF1 13612 105 - 1 AUAAAGGAUAAACAGCAGCAACAACAGAGAGGCAGCAAAAAAAGCAAAGAAA---AAAACAGUUGAAGGCUUCAUGGAAACGCGCUGGCUUUCAUAAAUAUUUCAAAU .....(((....((((.((.........(((((..(((..............---.......)))...)))))..(....)))))))...)))............... ( -17.90) >DroAna_CAF1 13321 82 - 1 AUAAAAAAUAA-----AGC-----------AGCAGCAACAGCG-A------A---ACAUGGCUUGAAGGCUUCAUGGCAACCAGCUGGCUUUCAUAAAUAUUUCAAAU ...........-----.((-----------....))......(-(------(---(.((....((((((((...(((...)))...))))))))...)).)))).... ( -16.20) >consensus AUAAAGGAUAAACAACAGCAACAACAGUGGAGCAGCAAAAAAAAAAA____A___AAAACAGUUGAAGGCUUCAUGGAAACGCGCUGGCUUUCAUAAAUAUUUCAAAU .....(((((.......((..(......)..))..............................((((((((.(.((....)).)..))))))))....)))))..... (-11.71 = -11.50 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:48 2006