| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,367,201 – 20,367,296 |
| Length | 95 |
| Max. P | 0.671025 |
| Location | 20,367,201 – 20,367,296 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 87.64 |
| Mean single sequence MFE | -31.12 |
| Consensus MFE | -23.71 |
| Energy contribution | -23.46 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20367201 95 + 27905053 UUGUGAAAUAAUAUUUGCAUGCUGUCGCGGAUUUUUCCGCGUUGGCUUUGCACUGCUAUCCAUGCUA--UCAU---------AUGGAUGGAUAGCUCUCGUCUAGA ..(.((.........((((.((((.((((((....)))))).))))..))))..(((((((((.(..--....---------..).))))))))))).)....... ( -34.90) >DroSec_CAF1 8806 95 + 1 UUGUGAAAUAAUAUUUGCAUGUUGUCGCGGAUUUUUCCGCGUUGGCUUUGUACUGCUAUCCAUGCUA--UCAU---------AUGGAUGGAUAGCUCUCGUCUAGA ..(.((.........((((.((((.((((((....)))))).))))..))))..(((((((((.(..--....---------..).))))))))))).)....... ( -30.40) >DroSim_CAF1 9872 95 + 1 UUGUGAAAUAAUAUUUGCAUGUUGUCGCGGAUUUUUCCGCGUUGGCUUAGCACUGCUAUCCAUGCUA--UCAU---------AUGGAUGGAUAGCUCUCGUCUAGA .((..((......))..)).((((.((((((....)))))).))))((((.((.(((((((((.(..--....---------..).)))))))))....)))))). ( -31.10) >DroEre_CAF1 8841 95 + 1 UUGUGAAAAUAUAUUUGCAUUCUGUCGCGGGUUUUUCCGCGUUGGCUUUGCACUACUAUCCAUGCUA--UCAU---------AUGGGUGGAUAGCUCUCGUCUAGA ..(.((.........((((..(((.((((((....)))))).)))...))))...((((((((.(..--....---------..).)))))))).)).)....... ( -26.90) >DroYak_CAF1 9910 95 + 1 UUGUGAAAUAAUAUUUGCAUGCUGUCGCGGGUUUUUCCGCGUUGGCUUGGCACUACUAUCCAUGCUA--UCAU---------AUGGAUGGAUAGCUCUCGUCUAGA ..(.((.........(((..((((.((((((....)))))).))))...)))...((((((((.(..--....---------..).)))))))).)).)....... ( -29.70) >DroAna_CAF1 9314 106 + 1 UUGUGAUAUAAUAUUUGCACGCUGUCGCGGAUUUUUCCGCUGUGGCUUGGAACUACUAUCCAUCCUGGCUCAUGUGGCUCCAAUGGGUGGGUAUGUCUCGCUGAGA ..((((.(((....((.((.((..(.(((((....))))).)..)).)).))....(((((((((.((((.....)))).....)))))))))))).))))..... ( -33.70) >consensus UUGUGAAAUAAUAUUUGCAUGCUGUCGCGGAUUUUUCCGCGUUGGCUUUGCACUACUAUCCAUGCUA__UCAU_________AUGGAUGGAUAGCUCUCGUCUAGA ..(.((.........(((..((((.((((((....)))))).))))...)))...((((((((.(...................).)))))))).)).)....... (-23.71 = -23.46 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:47 2006