Locus 7596

Sequence ID 3R_DroMel_CAF1
Location 20,364,583 – 20,364,673
Length 90
Max. P 0.500000
window12256

overview

Window 6

Location 20,364,583 – 20,364,673
Length 90
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.04
Mean single sequence MFE -24.95
Consensus MFE -15.62
Energy contribution -16.48
Covariance contribution 0.86
Combinations/Pair 1.22
Mean z-score -1.40
Structure conservation index 0.63
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20364583 90 + 27905053
CACCAGAUGCUUGGGCCUCGGCCAGAUCAUCCUCAUCGACAUUAUCAUCCAGUUG---GGUACUGUCCAACUGAAACGGAAAA----UUCUUUACAU
..((.((((.((.(((....))).)).))))..................((((((---((.....))))))))....))....----.......... ( -22.40)
>DroPse_CAF1 6265 89 + 1
CACCAGAGGCCUGGGCCUCCGCCAAAUCAUCAUCAUCCGGAUCCAUUUCGGUUUGAUCGCUGCUGUUCAACUGU-----GAAAUACAU---AUAGAU
.....(((((....))))).........(((.(((.(((((.....)))))..)))((((............))-----)).......---...))) ( -19.20)
>DroSec_CAF1 6194 90 + 1
CGCCAGAUGCUUGGGCCUCGGCCAGAGCAUCCUCAUCGACGUUAUCAUCCAGUUG---GGUACUGUCCAGCUGAAACGGAAAA----UUGUUUACAU
..((.(((((((.(((....))).)))))))..................((((((---((.....))))))))....))....----.......... ( -28.70)
>DroSim_CAF1 7251 90 + 1
CACCAGAUGCUUGGGCCUCGGCUAGAGCAUCCUCAUCGACAUUAUCAUCCAGUUG---GGUACUGUCCAGCUGAAACGGAAAA----UUCUUUACAU
..((.(((((((.(((....))).)))))))..................((((((---((.....))))))))....))....----.......... ( -27.20)
>DroEre_CAF1 6225 94 + 1
CGCCAGAUGCUUGGGCCUCGGCCAGAGCAUCCUCAUCGACAUCAUCUUCCAGUUG---CGUACUGUCCAACUGAAACGGGAAAAGCAUUGUUUACAU
.((..(((((((.(((....))).)))))))(((...(....)......((((((---.(......)))))))....)))....))........... ( -25.40)
>DroYak_CAF1 7288 94 + 1
CGCCAGAUGCUUGGGCCUCGGCCAGAGCAUCCUCAUCGACAUUAUCUUCCAAUUG---GGUGCUGUCCAACUGAAACGGGAAAAGCAUUGCUUAAAU
..((.(((((((.(((....))).))))))).(((..((((.(((((.......)---)))).))))....)))...))...((((...)))).... ( -26.80)
>consensus
CACCAGAUGCUUGGGCCUCGGCCAGAGCAUCCUCAUCGACAUUAUCAUCCAGUUG___GGUACUGUCCAACUGAAACGGAAAA____UUGUUUACAU
..((.(((((((.(((....))).)))))))..................((((((............))))))....)).................. (-15.62 = -16.48 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:44 2006