Locus 7595

Sequence ID 3R_DroMel_CAF1
Location 20,361,729 – 20,361,819
Length 90
Max. P 0.779678
window12255

overview

Window 5

Location 20,361,729 – 20,361,819
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 77.34
Mean single sequence MFE -26.10
Consensus MFE -15.75
Energy contribution -15.45
Covariance contribution -0.30
Combinations/Pair 1.25
Mean z-score -1.67
Structure conservation index 0.60
SVM decision value 0.55
SVM RNA-class probability 0.779678
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20361729 90 + 27905053
CACCGGCUCUCAACUGUUCUCCGGGGAGAGUCGCAUCUCCCUGGUUAACUAUCCAGAUGGAACUCCACCCAUUCCUUUUGAACAACAAAG-
..............(((((.(((((((((......)))))))))...........(((((........)))))......)))))......- ( -24.90)
>DroVir_CAF1 3341 90 + 1
CGAAGACACGCAGCUGUUCUCCGUCGAGAGUCGCAUCUCAGCAGUACACUACGCCGAUGGAACACCGCCGGUGCCUUAUGAGCAGCAAAC-
............(((((((((((((((((......)))).((.(((...))))).)))))).((((...))))......)))))))....- ( -28.00)
>DroSec_CAF1 3330 90 + 1
CACUGGCUCUCAACUGUUCUCCGGGGAGAGUCGCAUCUCCCUGGUAAACUAUCCAGAUGGAACUCCACCCAUUCCUUUUGAACAACAAAG-
..((((.........(((..(((((((((......)))))))))..)))...))))((((........))))..................- ( -24.90)
>DroSim_CAF1 4397 90 + 1
CACUGGCUCCCAACUGUUCUCAGGGGAGAGUCGCAUCUCCCUGGUAAACUAUCCAGAUGGAACUCCACCCAUUCCUUUUGAACAACAAAG-
...(((...)))..(((((..((((((((......)))))((((........))))((((........)))).)))...)))))......- ( -21.50)
>DroMoj_CAF1 3461 91 + 1
CGUAGACACCCAACUAUUCUCAGUUGAGAGUCGCAUCUCCGCGGUCAACUACGCCGAUGGCACACCGCCAGUGCCUUACGAGCAGCAAACC
.((((.....(((((......))))).((.((((......))))))..))))((((..(((((.......)))))...)).))........ ( -25.80)
>DroAna_CAF1 3382 88 + 1
CGCCGGAACUCAGCUGUUCUCUGGGGAAAGCCGUAUCUCCCUGGUUCACUAUCCGGACGGAACGCCGCCGGUUCCUUACGAGCAGCA--G-
............(((((((..((((((((((((........)))))......((((.(((....)))))))))))))).))))))).--.- ( -31.50)
>consensus
CACAGGCACUCAACUGUUCUCCGGGGAGAGUCGCAUCUCCCUGGUAAACUAUCCAGAUGGAACUCCACCCAUUCCUUAUGAACAACAAAG_
..............(((((...(((((((......)))))))................((((.........))))....)))))....... (-15.75 = -15.45 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:43 2006