Locus 7593

Sequence ID 3R_DroMel_CAF1
Location 20,352,119 – 20,352,210
Length 91
Max. P 0.723741
window12253

overview

Window 3

Location 20,352,119 – 20,352,210
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 75.78
Mean single sequence MFE -19.53
Consensus MFE -10.23
Energy contribution -12.10
Covariance contribution 1.87
Combinations/Pair 1.19
Mean z-score -1.80
Structure conservation index 0.52
SVM decision value 0.41
SVM RNA-class probability 0.723741
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20352119 91 - 27905053
CUGCAAUUG--GGCCAGCAUCCAUUGGCCAGAGUUCGUUGGCCACAGA-AACUUGUUUGUAAACAAA-ACAAAAGUGUCGGCGACACAAAAAAAA
.........--((((((......))))))...((((((((((.((...-...((((((.......))-))))..)))))))))).))........ ( -21.50)
>DroSec_CAF1 160617 90 - 1
CUGCAAUUG--GGCCAGCAUCCAUUGGCCAGAGUUCGUUGGCCACAGA-AACUUGUUUGUAAACAAA-ACAAAAGUGUCGGCGACAAGAAAAAA-
......(((--.(((.((((....(((((((......)))))))....-...((((((.......))-))))..)))).)))..))).......- ( -22.50)
>DroEre_CAF1 166373 89 - 1
CUGCAAUUG--GGCCAGCAUCCACUGGCCAGAGUUCGUUGGCCACAAA-AACUUGUUUGUAAACAAA-ACAAAAGUGUCGGCGACAAGAAAAA--
......(((--((((((......)))))).....((((((((.((...-...((((((.......))-))))..)))))))))))))......-- ( -23.80)
>DroYak_CAF1 169016 92 - 1
CUGCAAUUG--GGCCAGCAUCCAUUGGCCAGAGUUCGUUGGCCACAAAAAACUUGUUUGUAAACAAA-ACAAAAGUGUCGGCGACAAAAAAAUAU
......(((--.(((.((((....(((((((......)))))))........((((((.......))-))))..)))).)))..)))........ ( -22.50)
>DroMoj_CAF1 206269 83 - 1
AUUAAAUCGAAGAUCAG--UACUUCAGCUAGAGUUCGUUGGCCACA-A-AACGAGUUUCA-CACAAAGCCUUAAGCGA-AGCCACAAAA------
................(--(.((((.(((.(((.(((((.......-.-)))))((((..-....))))))).)))))-))..))....------ ( -13.10)
>DroAna_CAF1 167025 71 - 1
--------------------CACUUGGCCAGAGUUCGUUGGCCACA-A-AACUUGUUUGUAAACAAA-ACAAAAGUAUCCACGACAAAAACAAA-
--------------------.((((((((((......))))))...-.-...((((((.......))-))))))))..................- ( -13.80)
>consensus
CUGCAAUUG__GGCCAGCAUCCAUUGGCCAGAGUUCGUUGGCCACA_A_AACUUGUUUGUAAACAAA_ACAAAAGUGUCGGCGACAAAAAAAAA_
............(((.((((....(((((((......)))))))........(((((((....)))..))))..)))).)))............. (-10.23 = -12.10 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:41 2006