Locus 7592

Sequence ID 3R_DroMel_CAF1
Location 20,351,869 – 20,351,969
Length 100
Max. P 0.602327
window12252

overview

Window 2

Location 20,351,869 – 20,351,969
Length 100
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 87.02
Mean single sequence MFE -23.74
Consensus MFE -18.22
Energy contribution -19.22
Covariance contribution 1.00
Combinations/Pair 1.08
Mean z-score -1.58
Structure conservation index 0.77
SVM decision value 0.14
SVM RNA-class probability 0.602327
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20351869 100 - 27905053
GCUACACAGCGAGAAAAAUUCCAUAAAAAUUCCGUGCUGCGGCGUGGAAUGUGCGAAUUAAUUAACACA-A-UUUAAUCGCCAUUCGGUUACAUAUGUACAU
((..((..(((.(((..............))))))..))..))((((((((.((((.((((........-.-.)))))))))))))...(((....)))))) ( -18.84)
>DroSec_CAF1 160383 92 - 1
GCUACACAGCGAGAAAAAUUCCAUAAAAAUUCGGCGCUGCCGCGUGGAAUGUGCGAAUUAAUUAACACA-A-UUCAAUCGCCGUGCGGUUACAU--------
((..(((.((((................((((.((((....)))).))))....(((((.........)-)-)))..)))).)))..)).....-------- ( -23.00)
>DroSim_CAF1 169553 92 - 1
GCUACACAGCGAGAAAAAUUCCAUAAAAAUUCCGCGCUGCGGCGUGGAAUGUGCGAAUUAAUUAACACA-A-UUCAAUCGCCGUGCGGUUACAU--------
((..(((.((((................(((((((((....)))))))))....(((((.........)-)-)))..)))).)))..)).....-------- ( -27.10)
>DroEre_CAF1 166148 93 - 1
GCUGCACAGGGAGAAAAAUUCCAUACCAAUGCCGCGCGACUGCGUGGAAUGUGCGAAUUAAUUAACACACA-AUCAAUCGCCGUGCGGUUACAU--------
(((((((.((((......)))).........((((((....))))))...(.((((...............-.....)))))))))))).....-------- ( -26.25)
>DroYak_CAF1 168774 94 - 1
GCUACACGGCGAGAAAAAUUCCAUAAAAAUUCCGUGCUAGGGCAUGGAAUGUGCGAAUUAAUUAACACACACAUCAAUGGCCAUGCGGUUACAU--------
((..((.(((......((((((((....(((((((((....)))))))))))).)))))............((....))))).))..)).....-------- ( -23.50)
>consensus
GCUACACAGCGAGAAAAAUUCCAUAAAAAUUCCGCGCUGCGGCGUGGAAUGUGCGAAUUAAUUAACACA_A_UUCAAUCGCCGUGCGGUUACAU________
(((.(((.((((................(((((((((....)))))))))(((..((....))..))).........)))).))).)))............. (-18.22 = -19.22 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:40 2006