| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,340,191 – 20,340,290 |
| Length | 99 |
| Max. P | 0.588189 |
| Location | 20,340,191 – 20,340,290 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.91 |
| Mean single sequence MFE | -24.07 |
| Consensus MFE | -11.93 |
| Energy contribution | -12.02 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20340191 99 + 27905053 --ACAGU--AUAUGGC------AGUGAU-A-ACUACCUGCUUCACCCACAGAUUGGUGGUCAUCACCUGAUUCUUCAGAUUGACCUCAAUCAGCUGAGACAAUUUCAGACC --.((((--....(((------((.(..-.-....)))))).........((((((.(((((....((((....))))..))))))))))).))))............... ( -25.70) >DroVir_CAF1 190185 108 + 1 C--AUUUUCAUUAGCUCGCCUAAAUGUUUG-CCCACCUGCUUGACCCACAAAUUGGUGGUCAUCACCUGAUUCUUUAGAUUGACCUCAAUCAGCUGGGACAGCUUCAGGCC .--..............((((.((.(((..-((((.(((.((((.(((.....))).(((((....((((....))))..))))))))).))).))))..))))).)))). ( -29.40) >DroGri_CAF1 190898 108 + 1 UAUAGUU--AUUUAUUAGGCAAAUUAAUUA-CACACCUGUUUGACCCACAAAUUGGUGGUCAUCACCUGGUUUUUCAAAUUGACCUCAAUAAGCUGUGACAAUUUCAGGCC .......--........(((..........-..((((.(((((.....))))).))))(((((.....(((((.....((((....))))))))))))))........))) ( -19.60) >DroEre_CAF1 152004 99 + 1 --AUAGU--AUAGUGC------ACUCAU-A-ACUACCUGCUUCACCCAAAGGUUGGUGGUCAUCACCUGGUUCUUUAGAUUGACCUCAAUCAGCUGAGACAAUUUCAGACC --..(((--(((((..------......-.-))))..)))).........((((((.(((((....((((....))))..)))))))))))..((((((...))))))... ( -19.50) >DroWil_CAF1 163958 104 + 1 CUAUUUU--AUAAGUUAG----AAUCAG-AACUUACCUGUUUGACCCAUAAAUUGGUGGUCAUCACCUGAUUCUUCAAAUUCACCUCUAUCAACUGAGACAAUUUCAGACC .......--....(..((----((((((-(((......)))((((((........).)))))....)))))))).).................((((((...))))))... ( -19.00) >DroYak_CAF1 157309 99 + 1 --GUAGU--AUAUGGC------UGUGAU-A-GCUACCUGCUUCACCCACAGAUUGGUGGUCAUCACCUGGUUCUUUAGGUUGACCUCAAUCAGCUGAGACAAUUUCAGACC --.....--...(((.------.((((.-(-((.....))))))))))..((((((.(((((..((((((....)))))))))))))))))..((((((...))))))... ( -31.20) >consensus __AUAGU__AUAUGGC______AAUGAU_A_CCUACCUGCUUCACCCACAAAUUGGUGGUCAUCACCUGAUUCUUCAGAUUGACCUCAAUCAGCUGAGACAAUUUCAGACC ...................................................(((((.(((((....((((....))))..))))))))))...(((((.....)))))... (-11.93 = -12.02 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:33 2006