| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,339,463 – 20,339,564 |
| Length | 101 |
| Max. P | 0.542091 |
| Location | 20,339,463 – 20,339,564 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 84.77 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -18.02 |
| Energy contribution | -17.58 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20339463 101 - 27905053 UGA---GUAUCUUCUCUUUUUAGAUAUCACAUUUAAGUUGACCAUGCGGCGUAAGACCUUGUUCUAUACCGUUAAUUUGAUUGUGCCAUGUGUGGCUUUAACAU .((---.(((((.........)))))))(((.((((((((.....((((..((..((...))..))..)))))))))))).)))((((....))))........ ( -20.10) >DroSec_CAF1 148098 101 - 1 UAA---AUAUCUCCUCUUUUUAGAUAUCACAUUCAAGUUGACCAUGCGGCGUAAGACCUUGUUCUAUACAGUCAAUUUGAUUGUGCCAUGUGUAGCUUUAACAU ...---.............(((.((((((((.((((((((((.....(((....).)).(((.....))))))))))))).))))..)))).)))......... ( -22.30) >DroSim_CAF1 157182 101 - 1 UAA---AUAUCUCCUCUUUUUAGAUAUCACAUUCAAGUUGACCAUGCGGCGUAAGACCUUGUUCUAUACCGUCAAUUUGAUUGUGCCAUGUGUGGCUUUAACAU ...---((((((.........)))))).(((.((((((((((.....((..((..((...))..))..)))))))))))).)))((((....))))........ ( -22.90) >DroEre_CAF1 151269 101 - 1 UUA---UAAUACCCUCUACCCAGAUAUAACAUUCAAGUUGACAAUGCGACGUAAGACCUUGUUCUAUACCGUCAAUUUGAUUGUGCCGUGUGUGGCUUUAACGU ...---.............(((.((((.(((.((((((((((.(((.((((........)))).)))...)))))))))).)))...)))).)))......... ( -22.80) >DroYak_CAF1 156573 101 - 1 UUA---UUAUAAACCAUAUUCAGAUAUAACAUUCAAGUUGACCAUGCGGCGAAAGACCUUGUUCUAUACCGUCAAUUUGAUUGUACCUUGUGUGGCUUUAACUU ...---...((((((((((..((.(((((...((((((((((.....(((....).))..((.....)).))))))))))))))).)).)))))).)))).... ( -23.20) >DroAna_CAF1 153472 103 - 1 -AAAUUGUAUUUUGCAUUUUAAGAUAUAACAUUCAAGUUGACCAUGCGACGUAAGACAUUAUUCUAUACGGUUAAUUUGAUUGUUCCAUGUGUGGCAUUGACCU -....(((((((((.....)))))))))(((.(((((((((((.(((...)))(((......)))....))))))))))).)))((.(((.....))).))... ( -19.70) >consensus UAA___AUAUCUCCUCUUUUUAGAUAUAACAUUCAAGUUGACCAUGCGGCGUAAGACCUUGUUCUAUACCGUCAAUUUGAUUGUGCCAUGUGUGGCUUUAACAU ...................(((.((((((((.((((((((((.(((..(((........)))..)))...)))))))))).))))..)))).)))......... (-18.02 = -17.58 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:32 2006