Locus 7585

Sequence ID 3R_DroMel_CAF1
Location 20,334,656 – 20,334,767
Length 111
Max. P 0.683127
window12241

overview

Window 1

Location 20,334,656 – 20,334,767
Length 111
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 78.61
Mean single sequence MFE -26.83
Consensus MFE -16.06
Energy contribution -16.45
Covariance contribution 0.39
Combinations/Pair 1.09
Mean z-score -1.66
Structure conservation index 0.60
SVM decision value 0.31
SVM RNA-class probability 0.683127
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20334656 111 + 27905053
UAAAUGAUACUGCAAAUUAUUUAGGCAGCCAACGCGGCGUAUGCGCAAUGUCUGUUUGACACAGCAUAAACGAAG-UUUUUGCCAUAUUGUU--UUGGCUUCUUGGCUCGCCAA
((((((((.......))))))))(((((((((..((...(((((....((((.....))))..)))))..))...-.....((((.......--.))))...)))))).))).. ( -33.50)
>DroPse_CAF1 160655 105 + 1
UAAAUGAUACUGCAAAUUAUUUAGGCAGCCAACGUGGCGUAUGCACAAUGUCUGUUUGACAUAGCAAAUGCGAAACUUCUUGCCAUAUUCUU----AGCC----GCCCCACCA-
((((((((.......))))))))(((((......(.((((.(((...(((((.....))))).))).)))).)......)))))........----....----.........- ( -22.60)
>DroGri_CAF1 183258 94 + 1
UAAAUGAUAUUGCAAAUUAUUUGGGCAGGCCACGUGGCGUAUGCGCAUUGUCUGUUUGGCAUCAAAUGCUUUCAA-CUUUUACCAUAUUGUU--G---------------CC--
...........((((...((.((((((.(((....)))...)))((((((((.....))))....))))......-......))).))..))--)---------------).-- ( -21.30)
>DroYak_CAF1 151380 107 + 1
UAAAUGAUAUUGCAAAUUAUUUAGGCAGCCAACGCGGCGUAUGCGCAAUGUCUGUUUGACACAGCAUAAGCAAAG-UUGAUGCCAUAUUGUUUUUUGGCU------CUCGCCAC
((((((((.......))))))))((((..((((...((.(((((....((((.....))))..))))).))...)-))).))))...........((((.------...)))). ( -32.70)
>DroAna_CAF1 148535 103 + 1
UAAAUGAUACUGCAAAUUAUUUAGGCAGCCAACGUGGCGUAUGCGUAAUGUCUGUUUGACAUAGCAAAUGCGAAG-UUCAUGCCAUAUUGUU--A--GCA------CUGCCCCA
((((((((.......))))))))(((((.(((..((((((..((...(((((.....))))).((....))...)-)..))))))..)))..--.--...------)))))... ( -28.30)
>DroPer_CAF1 167239 105 + 1
UAAAUGAUACUGCAAAUUAUUUAGGCAGCCAACGUGGCGUAUGCACAAUGUCUGUUUGACAUAGCAAAUGCGAAACUUCUUGCCAUAUUCUU----AGCC----GCCCCACCA-
((((((((.......))))))))(((((......(.((((.(((...(((((.....))))).))).)))).)......)))))........----....----.........- ( -22.60)
>consensus
UAAAUGAUACUGCAAAUUAUUUAGGCAGCCAACGUGGCGUAUGCGCAAUGUCUGUUUGACAUAGCAAAUGCGAAA_UUCUUGCCAUAUUGUU_____GCC______CUCACCA_
((((((((.......))))))))(((((((.....)))...(((....((((.....))))..)))..............)))).............................. (-16.06 = -16.45 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:29 2006