Locus 7583

Sequence ID 3R_DroMel_CAF1
Location 20,320,060 – 20,320,168
Length 108
Max. P 0.998667
window12239

overview

Window 9

Location 20,320,060 – 20,320,168
Length 108
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 63.55
Mean single sequence MFE -17.82
Consensus MFE -8.52
Energy contribution -9.15
Covariance contribution 0.63
Combinations/Pair 1.17
Mean z-score -3.02
Structure conservation index 0.48
SVM decision value 3.18
SVM RNA-class probability 0.998667
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20320060 108 + 27905053
UACUUAAAGUGAUCAGCACCGCCCACUCACACACACAC-ACACACCAUGUGUGUGGUGCACACGACCACACCCACACAGUGGCUAAACUGUCAUGCAGUUAGUCAUUCA
........(((.((.((...)).......(((.(((((-(((.....))))))))))).....)).)))........(((((((((.(((.....)))))))))))).. ( -29.30)
>DroPse_CAF1 145771 81 + 1
UACUUAAAGUGAUCAACCCUAC--------------AU-AUAGACCAC-----------UCAC--ACACACACACACACUGGCUAAACUGUCAUGCAGUUAGUCAUUCA
........((((......(((.--------------..-.))).....-----------))))--..............(((((((.(((.....)))))))))).... ( -12.50)
>DroAna_CAF1 133379 96 + 1
UACUUAGAGUGAUCAACCCCCCCUUCCACCAG--CCACC-CA--GCAGACACACCCCUU--------ACAUGUAUACGGCAACUAAACUGUCAUGCAGUUAGUCAUUCA
......(((((((.(((..............(--(....-..--)).............--------...(((((((((........)))).)))))))).))))))). ( -16.90)
>DroPer_CAF1 152425 83 + 1
UACUUAAAGUGAUCAACCCUAC--------------AU-AUAGACCAC-----------UCACUCACACACACACACACUGGCUAAACUGUCAUGCAGUUAGUCAUUCA
.......(((((......(((.--------------..-.))).....-----------)))))...............(((((((.(((.....)))))))))).... ( -12.60)
>consensus
UACUUAAAGUGAUCAACCCCAC______________AC_ACAGACCAC___________UCAC__ACACACACACACACUGGCUAAACUGUCAUGCAGUUAGUCAUUCA
.............................................................................(((((((((.(((.....)))))))))))).. ( -8.52 =  -9.15 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:27 2006