Locus 7582

Sequence ID 3R_DroMel_CAF1
Location 20,319,576 – 20,319,669
Length 93
Max. P 0.551527
window12238

overview

Window 8

Location 20,319,576 – 20,319,669
Length 93
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 84.44
Mean single sequence MFE -35.50
Consensus MFE -24.08
Energy contribution -25.31
Covariance contribution 1.22
Combinations/Pair 1.04
Mean z-score -1.92
Structure conservation index 0.68
SVM decision value 0.04
SVM RNA-class probability 0.551527
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20319576 93 - 27905053
AAUCGUUUGGGGGGCG-------GUGGGUUGAGAAUAGUUUAUGGUGUCCAAAGGGC-GAUGGGAGUGGCCAGUUGCAACCUAAAAGGCUGCCACUCCGUU
.(((((((.(((.((.-------(((..(((....)))..))).)).)))...))))-))).((((((((.((((...........))))))))))))... ( -34.80)
>DroSec_CAF1 128109 100 - 1
AAUCGUUUGGGGGGCGGUGGGUGGUGGGUUGAGGAUAGUUUAUGGUGUCCGAAGGGC-GAUGGGCGUGGCCAGUUGCAACCUAAAAGGCUGCCACUCCGUU
........((((((((((......(((((((.(((((.(....).)))))((..(((-.((....)).)))..)).)))))))....)))))).))))... ( -37.60)
>DroSim_CAF1 136551 101 - 1
AAUCGUUUGGGGGUCGGCGGGUGGUGGGUUGAGGAUAGUUUAUGGUGUCCAAAGGUUUUAUCCCCCCCCCCAGUUGCAACCUAAAAUGCUGCCACUCCGUU
.........(((((.((((((.((.(((....(((((.(....).)))))...((......))))))))))....(((........))).))))))))... ( -34.10)
>consensus
AAUCGUUUGGGGGGCGG_GGGUGGUGGGUUGAGGAUAGUUUAUGGUGUCCAAAGGGC_GAUGGGCGUGGCCAGUUGCAACCUAAAAGGCUGCCACUCCGUU
........((((((((((......(((((((.(((((.(....).)))))...((..............)).....)))))))....)))))).))))... (-24.08 = -25.31 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:26 2006