Locus 7579

Sequence ID 3R_DroMel_CAF1
Location 20,314,303 – 20,314,404
Length 101
Max. P 0.889347
window12234

overview

Window 4

Location 20,314,303 – 20,314,404
Length 101
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 79.46
Mean single sequence MFE -29.34
Consensus MFE -21.86
Energy contribution -20.97
Covariance contribution -0.89
Combinations/Pair 1.18
Mean z-score -1.77
Structure conservation index 0.74
SVM decision value 0.96
SVM RNA-class probability 0.889347
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20314303 101 + 27905053
ACUAUCCCUGCUGUGCCGAACCGUAUCCGGGUGAGUUUAGUGGAGUUUAAAGCUU--CC-----CAUCGCCAGCAA-----UUACGCGAAAGCUCUACCCAAACUCAUCCCCC
........(((.((.....)).)))...((((((((((.(((((((((...((..--..-----....))..((..-----....))..)))))))))..))))))))))... ( -28.00)
>DroVir_CAF1 159744 106 + 1
AUUAUCCCUGCUGUGCCGAGCCGUAUCCGGGUGAGUUUCGUAGAGUUUAAAGCUC--UUACUUUGCUCGCUGGCACGC---CCACGCGAAAGCUCUACCCAAACUCACU--AU
.........((.((((((..(((....)))((((((...(((((((.....))))--.)))...))))))))))))))---....((....))................--.. ( -32.00)
>DroPse_CAF1 140489 106 + 1
ACUAUCCGUGCUGCGCCGAACCGUAUCCGGGUGAGUUUUGUGGAGUUUAAAGUUA--AC-----AAUCGCCGACAAUCAAAUUACGCGAAAGCUCUACCCAAACUCAUCCCUC
.......(.(.((((......)))).))((((((((((.(((((((((...(...--.)-----..((((...............)))))))))))))..))))))))))... ( -27.16)
>DroGri_CAF1 157184 108 + 1
AUUAUCCCUGCUGUGCGGAACCGUAUCCGGGUGAGUUUCGUAGGGUUUAAAGCAACAAAACUUUGCUCGCCGACACGC---GUACGCGAAAGCUCUACCCAAACUCACU--AU
.......(((..(((((....))))).)))((((((((.(((((((((...((((.......))))((((..((....---))..)))))))))))))..)))))))).--.. ( -33.10)
>DroMoj_CAF1 159389 106 + 1
AUUAUCCGUGCUGUGCCGAGCCCUAUCCCGGUGAGUUUCGUAGAGUUUAAAGCUC--ACACUUUGCUCGCCAACAAGC---GCACGCGAAAGCUCUACCCAAACUCACU--AU
.......(((((.((.(((((.........((((((((...........))))))--)).....))))).))...)))---))..((....))................--.. ( -28.64)
>DroPer_CAF1 147006 106 + 1
ACUAUCCGUGCUGCGCCGAACCGUAUCCGGGUGAGUUUUGUGGAGUUUAAAGUUU--AC-----AAUCGCCGACAAUCAAAUUACGCGAAAGCUCUACCCAAACUCAUCCCUC
.......(.(.((((......)))).))((((((((((.(((((((((...(...--.)-----..((((...............)))))))))))))..))))))))))... ( -27.16)
>consensus
ACUAUCCCUGCUGUGCCGAACCGUAUCCGGGUGAGUUUCGUAGAGUUUAAAGCUA__AC_____GAUCGCCGACAAGC___UUACGCGAAAGCUCUACCCAAACUCACC__AC
.............................(((((((((.(((((((((..................((((...............)))))))))))))..))))))))).... (-21.86 = -20.97 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:22 2006