| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,313,387 – 20,313,483 |
| Length | 96 |
| Max. P | 0.658230 |
| Location | 20,313,387 – 20,313,483 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 76.95 |
| Mean single sequence MFE | -26.33 |
| Consensus MFE | -19.16 |
| Energy contribution | -19.35 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20313387 96 + 27905053 AAUGGGCGUGGCGAACGAUUUAUGGUACACCAUUUAUCUGAGAGAUGA---GAUGAGGAGAUGAGGUAG-----CGACUUACACGCCUAAGACGCGGUAAGAAC ..((((((((.((.....(((((((....)).(((((((.(....).)---))))))...)))))....-----)).....))))))))............... ( -22.60) >DroPse_CAF1 139732 84 + 1 AAUGGGCGUGGCAUGCGAUUUAUGGGCAACCAUUUAUCUGGGA---------------AGCAGAGCCUA-----AGACUUACACGCCUAAGAUGCCGUGAGAAC ..((((((((......(((..((((....))))..)))((((.---------------.......))))-----.......))))))))......(....)... ( -27.50) >DroEre_CAF1 125734 91 + 1 AAUGGGCGUGGCCAGCGAUUUAUGGCCCACCAUUUAUCUGAGAG--------AUAAGGAGAUGAGGUAG-----CGACUUACACGCCUAAGACGCGGUAAGAAC .....(((.(((((........))))))(((..((((((.....--------......))))))))).)-----)..(((((.(((.......))))))))... ( -24.60) >DroYak_CAF1 128416 99 + 1 AAUGGGCGUGGCCAACGAUUUAUGGCCCACCAUUUAUCUGAGAGAUGAGGAGAUAAGGAGAUGAGGCAG-----CGACUUACACGCCUAAGACGCGGUAAGAAC ..((((((((.....((.......((((((..(((((((...........)))))))..).)).)))..-----)).....))))))))............... ( -23.90) >DroAna_CAF1 126689 101 + 1 AAUGGGCGGGGCCAAGAAUUUAUGGGCCACCAUUUAUCUGUGGGAUGG---GAGACGGGGACGGGGAAGAGAUGGGACUUACACGCCUAAGACGCCGUGAGAAC ..((((((((.(((........))).)).((((((.(((.((...(.(---....).)...)).)))..))))))........))))))......(....)... ( -31.90) >DroPer_CAF1 146252 84 + 1 AAUGGGCGUGGCAUGCGAUUUAUGGGCAACCAUUUAUCUGGGA---------------AGCAGAGCCUA-----AGACUUACACGCCUAAGAUGCCGUGAGAAC ..((((((((......(((..((((....))))..)))((((.---------------.......))))-----.......))))))))......(....)... ( -27.50) >consensus AAUGGGCGUGGCCAACGAUUUAUGGGCCACCAUUUAUCUGAGAG________AUAAGGAGAUGAGGCAG_____CGACUUACACGCCUAAGACGCCGUAAGAAC ..((((((((......(((..((((....))))..)))........................(((............))).))))))))............... (-19.16 = -19.35 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:21 2006