Locus 7577

Sequence ID 3R_DroMel_CAF1
Location 20,312,759 – 20,312,849
Length 90
Max. P 0.762690
window12232

overview

Window 2

Location 20,312,759 – 20,312,849
Length 90
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 75.64
Mean single sequence MFE -18.19
Consensus MFE -10.18
Energy contribution -10.87
Covariance contribution 0.69
Combinations/Pair 1.25
Mean z-score -1.96
Structure conservation index 0.56
SVM decision value 0.51
SVM RNA-class probability 0.762690
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20312759 90 - 27905053
CAA-AAAAUUAAACUCGCAUAUAUGUACGGAUAGCUCUACAAGCCGCAAAAAAAAAAAAAAAUGUGUGUGAGCAAGUGGAGCGGAGUGUAG
...-........(((((((....))).......(((((((..((((((..................)))).))..))))))).)))).... ( -19.97)
>DroSec_CAF1 121628 74 - 1
CAA-AAAAUUAAACUCGCAUAUAUGUACGGAUAGCUCUACAAGCCGCAAAA----------------GUGAACAAGUGGAGCGAUGCGGAG
...-..........((((((.(((......)))(((((((....(((....----------------))).....))))))).)))))).. ( -17.20)
>DroSim_CAF1 130006 74 - 1
CAA-AAAAUUAAACUCGCAUAUAUGUACGGAUAGCUUUACAAGCCGCAAAA----------------GUGGACAAGUGGAGCGAUGCGGAG
...-..........((((((.(((......)))(((((((...((((....----------------))))....))))))).)))))).. ( -19.10)
>DroYak_CAF1 127772 76 - 1
CAAGAGAAUUAAGCUCGCAUAU----ACCGAAAGCUCUACAAGCCGCAAGAA-----------AUGUGCAGGGAAUUGGAGCGAUGUCGAG
...(((.......)))......----..(((..((((((....((((((...-----------.).))).))....))))))....))).. ( -16.50)
>consensus
CAA_AAAAUUAAACUCGCAUAUAUGUACGGAUAGCUCUACAAGCCGCAAAA________________GUGAACAAGUGGAGCGAUGCGGAG
...............(((((.............(((((((...((((....................))))....))))))).)))))... (-10.18 = -10.87 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:21 2006