Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,311,552 – 20,311,644 |
Length | 92 |
Max. P | 0.757303 |
Location | 20,311,552 – 20,311,644 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -18.54 |
Energy contribution | -19.43 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.09 |
Mean z-score | -2.22 |
Structure conservation index | 0.68 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20311552 92 + 27905053 ---GGCAGAAAGGUAAACAAAAACCUGUGCGCGUGUU--UUGUGCAUCAAUAAAACACCGGCACACCGCCCA--CGCCGCACA-GCGUCAAGGUCCUUUU--- ---....((((((...((....(((((((((((((((--((((......))))))))).(((.....)))..--.).))))))-).))....))))))))--- ( -30.30) >DroSec_CAF1 120403 92 + 1 ---GGCAGAAAGGUAAACAAAAACCUGUGCGCGUGUU--UUGUGCAUCAAUAAAACACCGGCACUCCGCCCA--CGCCGCACAAGCGUCACGGUCCUUU---- ---(((....((((........))))(((((((((((--((((......))))))))).(((.....)))..--.).)))))....)))..........---- ( -27.30) >DroSim_CAF1 128806 92 + 1 ---GGCAGAAAGGUAAACAAAAACCUGUGCGCGUGUU--UUGUGCAUCAAUAAAACACCGGCACACCGCCCA--CGCCGCACAAACGUCAAGGUCCUUU---- ---(((....((((........))))(((((((((((--((((......))))))))).(((.....)))..--.).)))))....)))..........---- ( -27.30) >DroEre_CAF1 123974 93 + 1 ---GGCAGAAAGGUAAACAAAAACCUGUGCGCGUGUU--UUGUGCAUCAAUAAAACACCGGCACACCGCCCA--CGCCGCACG-ACGUCAAGGUCCU--CCUU ---(((....((((........))))(((((((((((--((((......))))))))).(((.....)))..--.).))))).-..)))((((....--)))) ( -29.30) >DroYak_CAF1 126528 102 + 1 AAAGGCAGAAAGGUAAACAAAAACCUGUGCGCGUGUUUUUUGUGCAUCAAUAAAACACCGGCACACCGCCCACACGCCGCACA-GCGCCAAGGUCCUUUCUUU ......(((((((...((.....(((((((((((((.((((((......))))))....(((.....))).))))).))))))-).).....))))))))).. ( -31.30) >DroMoj_CAF1 155917 79 + 1 --AGACCGAAAGGUAAACAAAAACCUGUGCGCGUGUU--UUUAGUAUCAAUAAAACACCGGCCGAGCGCC----------------UUCAAGGCAACCG---- --..(((....))).........(((..(((((((((--((..........)))))))(....).)))).----------------....)))......---- ( -17.60) >consensus ___GGCAGAAAGGUAAACAAAAACCUGUGCGCGUGUU__UUGUGCAUCAAUAAAACACCGGCACACCGCCCA__CGCCGCACA_GCGUCAAGGUCCUUU____ ...(((....((((........))))(((((.(((((..(((.....)))...))))).(((.....))).......)))))....))).............. (-18.54 = -19.43 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:20 2006