Locus 7574

Sequence ID 3R_DroMel_CAF1
Location 20,306,069 – 20,306,166
Length 97
Max. P 0.991397
window12229

overview

Window 9

Location 20,306,069 – 20,306,166
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 94.00
Mean single sequence MFE -20.03
Consensus MFE -19.11
Energy contribution -19.06
Covariance contribution -0.05
Combinations/Pair 1.05
Mean z-score -1.59
Structure conservation index 0.95
SVM decision value 2.27
SVM RNA-class probability 0.991397
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20306069 97 - 27905053
AAAUUGACUGAAAUCCAAGUAAAUGCAUAAAUCCGGCACAGAUCUCAAACUUUUAAUUGCGCCGUCUUGGAUUUUAUGGAUGUCAAUAUAUAUACGC
..(((((((((((((((((..............((((.(((...............))).)))).))))))))))).....)))))).......... ( -20.52)
>DroPse_CAF1 132353 94 - 1
AAAUUGACAAAAAUCCAAGUAAAUGCAUAAAUCCCUCCCAGAUCUCAAAGUUUUAAUUGCG-CGUCUUGGAUUUUAUGGAUGUCAAUAU--AUGCGC
..(((((((((((((((((...((((....(((.......)))......((.......)))-))))))))))))).....)))))))..--...... ( -18.60)
>DroSec_CAF1 114988 95 - 1
AAAUUGACAGAAAUCCAAGUAAAUGCAUAAAUCCGGCACAGAUCUCAUACUUUUAAUUGCGCCGUCUUGGAUUUUAUGGAUGUCAAUAU--AUACGG
..(((((((((((((((((..............((((.(((...............))).)))).)))))))))).....)))))))..--...... ( -21.12)
>DroSim_CAF1 123365 95 - 1
AAAUUGACAGAAAUCCAAGUAAAUGCAUAAAUCCGGCACAGAUCUCAAACUUUUAAUUGCGCCGUCUUGGAUUUUAUGGAUGUCAAUAU--AUACGG
..(((((((((((((((((..............((((.(((...............))).)))).)))))))))).....)))))))..--...... ( -21.12)
>DroAna_CAF1 119041 95 - 1
AAAUUGACAGAAAUCCAAGUAAAUGCAUAAAUCCGGCCCAGAUCUCAAAGUUUUAAUUGCGCCGUCUUGGAUUUUAUGGAUGUCAAUAU--AUACGC
..(((((((((((((((((..............((((.(((...............))).)))).)))))))))).....)))))))..--...... ( -20.22)
>DroPer_CAF1 138898 94 - 1
AAAUUGACAAAAAUCCAAGUAAAUGCAUAAAUCCCUCCCAGAUCUCAAAGUUUUAAUUGCG-CGUCUUGGAUUUUAUGGAUGUCAAUAU--AUGCGC
..(((((((((((((((((...((((....(((.......)))......((.......)))-))))))))))))).....)))))))..--...... ( -18.60)
>consensus
AAAUUGACAGAAAUCCAAGUAAAUGCAUAAAUCCGGCACAGAUCUCAAACUUUUAAUUGCGCCGUCUUGGAUUUUAUGGAUGUCAAUAU__AUACGC
..(((((((((((((((((....((((..............................))))....)))))))))).....))))))).......... (-19.11 = -19.06 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:18 2006