Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,661,694 – 2,661,793 |
Length | 99 |
Max. P | 0.965047 |
Location | 2,661,694 – 2,661,793 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 95.98 |
Mean single sequence MFE | -26.62 |
Consensus MFE | -23.54 |
Energy contribution | -24.42 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.03 |
Mean z-score | -1.73 |
Structure conservation index | 0.88 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2661694 99 - 27905053 AUAUUUAAGGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCAGGAACAUACAAAC- ........((.((((....)))).))............((((((.((.(.((((.((..((((((....))))))..)))))).).)).)))).))...- ( -28.10) >DroSec_CAF1 21104 99 - 1 AUAUUUAAGGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCGGGAACAAACAAAC- ........((.((((....)))).))...............(((.((.(.((((.((..((((((....))))))..)))))).).)).))).......- ( -27.00) >DroSim_CAF1 14245 99 - 1 AUAUUUAAGGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCGGGAACAUACAAAC- ........((.((((....)))).))............((((((.((.(.((((.((..((((((....))))))..)))))).).)).)))).))...- ( -28.80) >DroEre_CAF1 14239 100 - 1 AUAUUUAAAGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCAGGAACGUACAUACG .((((......((((....))))......))))....(((((((.((.(.((((.((..((((((....))))))..)))))).).)).)))).)))... ( -25.50) >DroYak_CAF1 21215 99 - 1 AUAUUUAAAGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCAGGAACCCACAUAU- .((((......((((....))))......)))).......(((((((.(.((((.((..((((((....))))))..)))))).).))....)))))..- ( -23.70) >consensus AUAUUUAAGGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCAGGAACAUACAAAC_ .((((...((.((((....)))).))...)))).....((((((.((.(.((((.((..((((((....))))))..)))))).).)).)))).)).... (-23.54 = -24.42 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:21 2006