| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,290,492 – 20,290,593 |
| Length | 101 |
| Max. P | 0.500000 |
| Location | 20,290,492 – 20,290,593 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 82.67 |
| Mean single sequence MFE | -24.25 |
| Consensus MFE | -15.70 |
| Energy contribution | -14.73 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20290492 101 + 27905053 ----ACCAGCUGCAAUUGGCCUUCAUUUGCGAAUGAGCAAAUAAGUGAGUUAACUGUAAUUUCGGGCUAGUAAUCAUUAAUAAUUUAUGGCCAAUAGGCCU---UC-GU ----....(((...(((((((...((((((......))))))..((((((((.(((......)))..((((....)))).))))))))))))))).)))..---..-.. ( -24.10) >DroVir_CAF1 131327 97 + 1 ----A-CGGCUACAAUUGGCCUUCAUUUGCAAAUGAGUAAAUAAGUGAGCUAACUGUAAUGCUGGUCUAGUAAUCAUUAAUAAUUUAUGGUCAACAGGUCC---C---- ----.-.(((((((.((((((((.((((((......)))))))))...))))).))))..)))((.((.((.(((((.........)))))..)).)).))---.---- ( -18.70) >DroGri_CAF1 128991 102 + 1 ----A-CAGCAACAAUUGGCCUUCAUUUGCAAAUGAGCGAAUAACUAAGCUAACUGUAAUUUUGG-CUAGUAAUCAUUAAUAAUUUAUGGUCAUCAGGCCAGUCAA-AA ----.-........((((((((..((((((......)))))).((((.(((((........))))-)))))........................))))))))...-.. ( -22.50) >DroWil_CAF1 108300 101 + 1 --ACAGCAACAACAAUUGGCCUUCAUUUGCGAAUGAGCAAAUAAGUGAGUUAACUGUAAUUU-GGGCUAGUAAUCAUUAAUAAUUUAUGGUCAAUAGGCC----CA-GU --.........(((.((((((((.((((((......)))))))))...))))).)))...((-(((((.((.(((((.........)))))..)).))))----))-). ( -22.20) >DroMoj_CAF1 130830 100 + 1 ----G-CGGCAGCAAUUGGCCUUCAUUUGCAAAUGAGCAAAUAAGUGAGCUAACUGUAAUUUUGGCCUAGUAAUCAUUAAUUAUUUAUGGUCAUCAGGCCC---CG-AA ----.-(((..(((.((((((((.((((((......)))))))))...))))).)))......(((((.((.(((((.........))))).)).))))))---))-.. ( -27.10) >DroAna_CAF1 103166 104 + 1 CC--CCUGGCUGCAAUUGGCCUUCAUUUGCGAAUGAGCAAAUAAGUGAGUUAACUGUAAUUUCAGGCUAGUAACCAUUAAUAAUUUAUGGCCAAUAGGCCC---CCAGU ..--.((((..((.(((((((...((((((......)))))).((((.((((.(((......))).....))))))))..........)))))))..))..---)))). ( -30.90) >consensus ____A_CAGCAACAAUUGGCCUUCAUUUGCAAAUGAGCAAAUAAGUGAGCUAACUGUAAUUUUGGGCUAGUAAUCAUUAAUAAUUUAUGGUCAACAGGCCC___CA_GU ...........(((.((((((((.((((((......)))))))))...))))).)))...............................((((....))))......... (-15.70 = -14.73 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:09 2006