Locus 7566

Sequence ID 3R_DroMel_CAF1
Location 20,284,296 – 20,284,392
Length 96
Max. P 0.860601
window12216

overview

Window 6

Location 20,284,296 – 20,284,392
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 77.19
Mean single sequence MFE -30.83
Consensus MFE -11.08
Energy contribution -14.75
Covariance contribution 3.67
Combinations/Pair 1.28
Mean z-score -2.70
Structure conservation index 0.36
SVM decision value 0.83
SVM RNA-class probability 0.860601
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20284296 96 + 27905053
ACUUUGUGCGACAUGCGAUUG--GUUUUUGUUCCCGUUUCUGCCCCACUUGAAAUGCAUUCCCAGUCGCAUGUUGGCC----UGGCCAAUUGGCCAGCUACC
........(((((((((((((--(....(((....(((((..........))))))))...))))))))))))))((.----(((((....))))))).... ( -36.90)
>DroSec_CAF1 93575 81 + 1
ACUUUGU----------------GUUUUUGUUCCCGUUUCUGCCUCACUUGAAAUGCAUUC-CAGUCGCAUGUUGGCC----AGGCCAAUUGGCCAGCUACC
.....((----------------((..(((....((((((..........)))))).....-)))..))))(((((((----((.....))))))))).... ( -21.40)
>DroSim_CAF1 101849 97 + 1
ACUUUGUGCGACAUGCGAUUGGGGUUUUUGUUCCCGUUUCUGCCUCACUUGAAAUGCAUUC-CACUCGCAUGUUGGCC----GGGCCAAUUGGCCAGCUACC
........((((((((((.(((((........))((((((..........))))))....)-)).))))))))))((.----.((((....)))).)).... ( -32.80)
>DroEre_CAF1 96325 95 + 1
ACUUUGUGCGACAUGCGAUUG--GUUUCUGUUCCCGUUUCUGUCUCGGUUAAAAUGCAUUC-CAGUCGCAUGUUGGCC----GGGCAAAUUGGCCAGCUACC
.....((((((((((((((((--(..((..(..(((.........)))..)....).)..)-))))))))))))((((----((.....)))))).)).)). ( -33.30)
>DroYak_CAF1 97716 95 + 1
ACUUUGUGGGACAUGCGAUUG--GUUUCUGUUCCCGUUUCUGCCUCAGUUGCAAUGCAUUC-CAGUCGCAUGUUGCCC----GGCCAAAUUGGCCAGCUACC
.......((((((((((((((--(....(((....((..(((...)))..))...)))..)-)))))))))))..)))----((((.....))))....... ( -35.90)
>DroAna_CAF1 98014 92 + 1
ACUUUGUGUUGCAUGCGAUUG--CUUUUUGUUGCCAUUUCCG------UGGCAAUGCAUUC-UUGUUCCG-AUUGUCCUUUUGGGCGAAUUCGCAGAAAUGU
..((((((..(((...((.((--(.....((((((((....)------)))))))))).))-.)))..).-.((((((....))))))....)))))..... ( -24.70)
>consensus
ACUUUGUGCGACAUGCGAUUG__GUUUUUGUUCCCGUUUCUGCCUCACUUGAAAUGCAUUC_CAGUCGCAUGUUGGCC____GGGCCAAUUGGCCAGCUACC
........(((((((((((((.......((....((((((..........))))))))....)))))))))))))........((((....))))....... (-11.08 = -14.75 +   3.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:06 2006