| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,283,068 – 20,283,170 |
| Length | 102 |
| Max. P | 0.907554 |
| Location | 20,283,068 – 20,283,170 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.62 |
| Mean single sequence MFE | -34.76 |
| Consensus MFE | -16.12 |
| Energy contribution | -16.60 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.907554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20283068 102 + 27905053 CUUUGAAUCUCUGAGAUAC-AGGACCUUUCUCGCUCUCUUCGAGUGGCAGGUCCUUUGGCAUGAUGGUAAGUAAGCAUUGGGCUUUGGUUCUCAAGCGGUCAC ...(((.((.((((((..(-(((((((...((((((.....)))))).))))))...(((..((((.(.....).))))..))).))..)))).)).))))). ( -29.00) >DroSec_CAF1 92361 93 + 1 CUCUGAAUCUCAGAGAUACCAGGACCUUUCUCGCUCUCUUCGAGUGGCAGAUCCCUUGGCAUGCUGGUAAGUAAGCAAUGGGCUUACUUA----------CAC (((((.....)))))...(((((...(((.((((((.....)))))).)))...))))).......((((((((((.....)))))))))----------).. ( -32.40) >DroSim_CAF1 100614 98 + 1 CUCUGAAUCUCAGAGAUACC--GAGCUUUCUCGCUCUCUUCGAGUGGCAG-UCCUUUGCCAUGCUGU--AGUAAGCGAUGGGCUUGGUUUCUCAAGCAGUCAC ...(((......((((.(((--((((((..(((((..((.((.(((((((-....)))))))..)).--))..))))).))))))))).))))......))). ( -39.10) >DroEre_CAF1 95058 102 + 1 AACUGAAUCUCUGAGGUAC-AGGACCUUUAUCGCUCUCUUCGAGUGGCAGGUCCUACGGCAUGCUGGUAACCAAGCAAUGGGCUUUGGUUCCCAAGCAGUCUC ...................-(((((((...((((((.....)))))).)))))))..(((.((((((.((((((((.....)).)))))).)).))))))).. ( -36.30) >DroYak_CAF1 96419 102 + 1 CUCUGAAUCUCUGAGAUAC-AGGACCUUGCUCGCUCUCUUCGAGUGGCAGGUCCUUUCGCAUGCUGGCAAGCUAGCAAUGGGCUCUGCUUCUCAAGCAGUUUC (((.(.....).)))....-(((((((.((.(((((.....))))))))))))))...((.((((((....))))))....)).(((((.....))))).... ( -37.00) >consensus CUCUGAAUCUCUGAGAUAC_AGGACCUUUCUCGCUCUCUUCGAGUGGCAGGUCCUUUGGCAUGCUGGUAAGUAAGCAAUGGGCUUUGGUUCUCAAGCAGUCAC ............(((......((((((...((((((.....)))))).)))))).....((((((........)))).))..))).................. (-16.12 = -16.60 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:05 2006