| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,262,325 – 20,262,429 |
| Length | 104 |
| Max. P | 0.948412 |
| Location | 20,262,325 – 20,262,429 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 77.09 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -17.85 |
| Energy contribution | -18.05 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.948412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20262325 104 - 27905053 A---AGUUGGAAAACAGAG-CGGG-AGAAGUUGACAUAUGACAUUUAAUUUAGUGUCUUUGGUAUGUUGCCU----UUGGCCUGGCACAAUGCCAAAAGCAUUUGCUCACAUU .---.(((....))).(((-(((.-.((((..(((((((((((((......))))))....)))))))..))----))..))((((.....)))).........))))..... ( -32.00) >DroPse_CAF1 79055 107 - 1 G----AGAGAGAGACAGGG-CAGGAAGAAGUUGACAUAUGACAUUUAAUUUAGUGUCUUUGGUAUGUUGCCUUCCUUU-GGCUGGCACAAUGCCAAAAGCAUUUGCUCGCAUU .----...(.(((.(((((-(.....((((..(((((((((((((......))))))....)))))))..)))).(((-(((.........)))))).)).))))))).)... ( -30.30) >DroGri_CAF1 93234 90 - 1 ------------AACACACA------GAACUUGACAUAUGACAUUUAAUUUACUGUCUUCGGUGUGUUGCUU----UC-GCUUGGCGUACUGCCAUAAGCAUUUGCUCACAUU ------------(((((((.------(((...((((.................))))))).)))))))((..----..-(((((((.....))))..)))....))....... ( -20.03) >DroWil_CAF1 79343 91 - 1 ---------------AAUG-UGAG-AGAACUUGACAUAUGACAUUUAAUUUAGUGUCUUUGGUAUGUUGCCU----UC-ACUUGGCGCAAUGCCAAAAGCAUUUGUGAGCAUU ---------------.(((-((((-....))).))))..((((((......))))))((((((((..((((.----..-....))))..)))))))).((........))... ( -22.50) >DroAna_CAF1 73878 106 - 1 ACCGACCGGAGGAACAGAG-AAAG-AGAAGUUGACAUAUGACAUUUAAUUUAGUGUCUUUGGUAUGUUGCCU----UC-UCUUGGCACAAUGCCAAAAGCAUUUGCUCGCAUU .((....)).......(((-.(((-(((((..(((((((((((((......))))))....)))))))..))----))-))))(((.....)))...........)))..... ( -31.40) >DroPer_CAF1 77537 103 - 1 G--------AGAGACAGGG-CAGGAAGAAGUUGACAUAUGACAUUUAAUUUAGUGUCUUUGGUAUGUUGCCUUCCUUU-CGCUGGCACAAUGCCAAAAGCAUUUGCUCGCAUU .--------.......(((-((((((((((..(((((((((((((......))))))....)))))))..))).))))-)((((((.....)))...)))...)))))..... ( -31.90) >consensus _________AGAAACAGAG_CAGG_AGAAGUUGACAUAUGACAUUUAAUUUAGUGUCUUUGGUAUGUUGCCU____UC_GCCUGGCACAAUGCCAAAAGCAUUUGCUCGCAUU .......................................((((((......))))))((((((((..((((............))))..))))))))(((....)))...... (-17.85 = -18.05 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:55 2006