Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,658,219 – 2,658,318 |
Length | 99 |
Max. P | 0.525734 |
Location | 2,658,219 – 2,658,318 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 79.82 |
Mean single sequence MFE | -33.90 |
Consensus MFE | -20.26 |
Energy contribution | -20.18 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.56 |
Structure conservation index | 0.60 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2658219 99 + 27905053 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC-----GAGCGUCGCGCAUGCGCACAUAAAUUAGCCG---AGCUGCGCGGAAAACCUGUUCUGUG--UUUUCG- ....(((.((((((((((..((((((.....))))))-----.......(((....))).))).))))))).)---))..((((((((......)))))))--).....- ( -35.30) >DroGri_CAF1 8611 100 + 1 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC-----AAGCGUCGCGCUUGCGCAUAUAAAUUAGCUG---GCGCGACGGUCAAACCAGUUAUACA--GAUACCC .................(((((((((.....))))))-----.(((((((((((.((............)).)---)))))))((.....)).))).....--....))) ( -37.20) >DroEre_CAF1 10610 91 + 1 CUACCUCAGUUAAUUAUUGGGCUCCCGAGCAGGGAGC-----GAACGUCGCGCAUGCGCACAUAAAUUAGCCG---AGCUGCGCGGAAAACCUGUUCU----------G- .....(((((.....)))))((((((.....))))))-----((((((((((((.((((..........))..---.)))))))))......))))).----------.- ( -29.10) >DroYak_CAF1 17774 106 + 1 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGCCUCCCGAGCGUCGCGCAUGCGCACAUAAAUUAGCCG---AGCUGCGCUGAAAACCUGUUCUCUGUUUUUUCG- ....(((.(((((((..(((((((((.....)))))))))......((.(((....)))))...))))))).)---))...((..((((((..(....).)))))).))- ( -33.20) >DroMoj_CAF1 23647 91 + 1 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC-----GAGCGUUGCGCAUGCGCACAUAAAUUAGCUG---ACGCGCCAACAAAACCGGUUC-----------CU .....(((((((((((((..((((((.....))))))-----..((((.......)))).))).)))))))))---).(.(((.........))).)-----------.. ( -30.70) >DroAna_CAF1 6438 102 + 1 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC-----GAGCGUCGCGCAUGCGCACAUAAAUUAGUCGGGUAGCUGCGGUGGAAACCAGUUUUUCG--GUUUCC- ..(((.((((((....(((.((((((.....))))))-----....((.(((....))))).........)))..)))))).)))(((((((........)--))))))- ( -37.90) >consensus CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC_____GAGCGUCGCGCAUGCGCACAUAAAUUAGCCG___AGCUGCGCGGAAAACCUGUUCU__G___UUUCC_ ........((((((((((..((((((.....))))))............(((....))).))).)))))))....................................... (-20.26 = -20.18 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:20 2006