| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,255,136 – 20,255,227 |
| Length | 91 |
| Max. P | 0.703869 |
| Location | 20,255,136 – 20,255,227 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.81 |
| Mean single sequence MFE | -30.04 |
| Consensus MFE | -16.41 |
| Energy contribution | -16.94 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20255136 91 - 27905053 UCAUGAUGAUUAUAAUCAGAGAGCAGCCAGCAGAAG-GCAGCAA--------------------GCAGAAAGCGGGCCACUUGGCGCUUGUAAUGUAGUUUGUUGUUGCUGC--- ((.((((.......))))))..((((((((((((..-(((((((--------------------((.(....)..(((....)))))))))..)))..)))))))..)))))--- ( -30.60) >DroPse_CAF1 71584 113 - 1 UCACGAUGAUUAUAAUCAGAGAGCAGCCAGCAAAAA-GCAGCAGUGGCAGAGGCAGAGG-AGGGGCAGCGGCAGGGCCACUUGGGGCUUGUAAUGUUGUUUGUUGCUGCUGCUGG ...(..((((....))))..)((((((.(((((.((-((((((...(((..(((.(((.-...(((..(....).))).)))...))))))..)))))))).))))))))))).. ( -40.60) >DroSec_CAF1 64773 91 - 1 UCAUGAUGAUUAUAAUCAGAGAGCAGCCAGCAGAAG-GCAGCAA--------------------GCAGAAAGCGGGCCACUUGGCGCUUGUAAUGUUGUUUGUUGUUGCUGC--- ((.((((.......))))))..((((((((((((..-(((((((--------------------((.(....)..(((....)))))))))..)))..)))))))..)))))--- ( -30.60) >DroEre_CAF1 66640 77 - 1 UCAUGAUGAUUAUAAUCAGAGAGCAGCCAGCA-----------------------------------GAAAGCGGGCCACUUGGCGCUUGUAAUGUUGUUUGUUGUUGCUGC--- ((.((((.......))))))..((((((((((-----------------------------------((.((((.(((....))).).......))).)))))))..)))))--- ( -21.11) >DroYak_CAF1 67536 92 - 1 UCAUGAUGAUUAUAAUCAGAGAGCAGCCAGCAGAAGAGCAGAAA--------------------GCAGAAAGCGGGCCACUUGGCGCUUGUAAUGUUGUUUGUUGUUGCUGC--- ((.((((.......))))))..((((((((((((..((((..((--------------------((.(....)..(((....)))))))....)))).)))))))..)))))--- ( -26.40) >DroAna_CAF1 66300 105 - 1 UCAUGAUGAUUGUAAUCAGAAGGCAGCCAGCAGAAA-GCAAAGA--GCA---UGAAA-GCAAAAGCAGGAGCGGGGCCACUUGGUGCUUGUAAUGUUGUUUGUUGUUGCUGC--- ((.((((.......))))))..(((((.((((....-(((((.(--(((---(..((-((....((....))...(((....)))))))...))))).))))))))))))))--- ( -30.90) >consensus UCAUGAUGAUUAUAAUCAGAGAGCAGCCAGCAGAAG_GCAGCAA____________________GCAGAAAGCGGGCCACUUGGCGCUUGUAAUGUUGUUUGUUGUUGCUGC___ ((.((((.......))))))..((((((((((((...((.........................)).......(.(((....))).)...........)))))))..)))))... (-16.41 = -16.94 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:51 2006