Locus 7557

Sequence ID 3R_DroMel_CAF1
Location 20,250,544 – 20,250,638
Length 94
Max. P 0.988019
window12199

overview

Window 9

Location 20,250,544 – 20,250,638
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.49
Mean single sequence MFE -22.12
Consensus MFE -19.36
Energy contribution -19.40
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -2.04
Structure conservation index 0.88
SVM decision value 2.10
SVM RNA-class probability 0.988019
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20250544 94 - 27905053
AAAAGCACCAACAACAAAAGUUGGCCAACAACAAAGAGCCUGGACUUUGGACUCAGCCGCAGCUCAUUACGAACAAAUUGACGGCUAGCUAACA
...(((.(((((.......)))))...........(((((........)).)))((((((((...............))).))))).))).... ( -20.76)
>DroSec_CAF1 60109 93 - 1
AAAAGCGCCAGCAACAAAAGUUGGACAACAACAAAGCGCC-GGACUUUGGACUCAGCCGCAGCUCAUUACGAACAAAUUGACGGCUAGCUAACA
...(((((((((.......))))).)...........(((-(((((.(((......))).)).))....(((.....))).))))..))).... ( -19.30)
>DroSim_CAF1 64100 94 - 1
AAAAGCGCCAGCAACAAAAGUUGGCCAACAACAAAGAGCCAGGACUUUGGACUCAGCCGCAGCUCAUUACGAACAAAUUGACGGCUAGCUAACA
...(((((((((.......))))))..........(((((((....)))).)))((((((((...............))).))))).))).... ( -25.06)
>DroEre_CAF1 61952 94 - 1
ACAAGCACCAGCAACAAAAGUUGGCCAACAACAAAGAGCCUGGACUUUGGACUCAGCCGCAGCUCAUUACGAACAAAUUGACGGCUAGCUAACA
....((....)).......((((((..........(((((........)).)))((((((((...............))).))))).)))))). ( -21.96)
>DroYak_CAF1 62635 94 - 1
AAAAGCACCAGCAACAAAAGUUGGCCAACAACAAUGAGCCUGGACUUUGGACUCAGCCGCAGCUCAUUACGAACAAAUUGACGGCUAGCUAACA
....((....))......((((((((......(((((((.(((.((........)))))..))))))).(((.....)))..)))))))).... ( -23.50)
>consensus
AAAAGCACCAGCAACAAAAGUUGGCCAACAACAAAGAGCCUGGACUUUGGACUCAGCCGCAGCUCAUUACGAACAAAUUGACGGCUAGCUAACA
...(((.(((((.......)))))...........(((((........)).)))((((((((...............))).))))).))).... (-19.36 = -19.40 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:50 2006