| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,245,596 – 20,245,715 |
| Length | 119 |
| Max. P | 0.584849 |
| Location | 20,245,596 – 20,245,715 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 83.71 |
| Mean single sequence MFE | -20.37 |
| Consensus MFE | -15.38 |
| Energy contribution | -17.02 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20245596 119 + 27905053 AGUUGAUUGCAAUUUCCAGGACAACGGAAAAAACAAAAAAAAAAAAACAAUGUACACAAGUAGUGAUUUCAGUGCGGAGAAUUUACAAGCAAUUGUAUGCCAAUAAGGAAAAGCAGGCA ....((((((..(((((........)))))....................((((.....(((.((....)).)))........)))).))))))...((((..............)))) ( -18.56) >DroPse_CAF1 61660 93 + 1 AGUUGAUUGCAAUUUCCAGUACAACAAAAAA--------------------------AGGCACUGAUUUCUGUGUGGAGAAUUUACAAGCAAUUGUAUGCCAAUAAGGAAAAGCAGGCA .((((((((.......)))).))))......--------------------------..((.(((.(((((...(((......(((((....)))))..)))...)))))...))))). ( -21.40) >DroSec_CAF1 55272 113 + 1 AGUUGAUUGCAAUUUCCAGGACAACGGAAAAAACAAAAA-AAA-----AAUGCACACAAGCAGUGAUUUCAGUGCGGAGAAUUUACAAGCAAUUGUAUGCCAAUAAGGAAAAGCAGGCA .......(((..(((((........))))).........-...-----..(((......(((.((....)).)))((......(((((....)))))..))...........))).))) ( -21.70) >DroEre_CAF1 57075 109 + 1 AGUUGAUUGCAAUUUCCAGGAGAACAGAAA----AACAA-AAA-----AAUGUAUACAAGCAGUGAUUUCAGUGCGGAGAAUUUACAAGCAAUUGUAUGCCAAUAAGGAAAAGAAGGCA ............(((((.............----.(((.-...-----..)))......(((.((....)).))))))))...(((((....)))))((((..............)))) ( -18.74) >DroYak_CAF1 57539 111 + 1 AGUUGAUUGCAAUUUCCAGGAGAACAAAAC--ACAAAAA-AAA-----AAUGUAUACAAGCAGUGAUUUCAGUGCGGAGAAUUUACAAGCAAUUGUAUGCCAAUAAGGAAAGGCAGGCA .......(((..(((((.............--.......-...-----..((....)).(((.((....)).))))))))...(((((....)))))((((..........)))).))) ( -21.10) >DroAna_CAF1 56809 116 + 1 AGUUGAUUGCAAUUUCCAGAACAACAAAAAAAAAAAAGGGAAAUA---AAAAACUACAAGCACUGAUUUCUGUGUGGAGAAUUUACAAGCAAUUGUAUGCCAAUAAGGAAAAGCAGGCA ((((.......((((((.....................)))))).---...))))....((.(((.(((((...(((......(((((....)))))..)))...)))))...))))). ( -20.70) >consensus AGUUGAUUGCAAUUUCCAGGACAACAAAAAA_ACAAAAA_AAA_____AAUGUAUACAAGCAGUGAUUUCAGUGCGGAGAAUUUACAAGCAAUUGUAUGCCAAUAAGGAAAAGCAGGCA ...((.((((..(((((..........................................(((.((....)).)))((......(((((....)))))..)).....))))).)))).)) (-15.38 = -17.02 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:49 2006