Locus 7553

Sequence ID 3R_DroMel_CAF1
Location 20,234,620 – 20,234,723
Length 103
Max. P 0.717839
window12190

overview

Window 0

Location 20,234,620 – 20,234,723
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 96.57
Mean single sequence MFE -15.53
Consensus MFE -14.70
Energy contribution -14.73
Covariance contribution 0.03
Combinations/Pair 1.03
Mean z-score -0.93
Structure conservation index 0.95
SVM decision value 0.39
SVM RNA-class probability 0.717839
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20234620 103 + 27905053
ACUUCGCCAUGCCAUUUUUAUUUUUAUAAAUCUAAUGAAAGAUAAUGAAAUUUUAUUUCGUUUCUUUUGAUUUCAACGCAGUUGUCGUCAGCUUUCAUGCUAA
.....((.........(((((....)))))....(((((((..((((((((...))))))))....(((((..((((...))))..))))))))))))))... ( -15.20)
>DroPse_CAF1 51989 103 + 1
AUUUCUCCACGCCAGUUUUAUUUUUAUAAAUCUAAUGAAAGAUAAUGAAAUUUUAUUUCGUUUCUUUUGAUUUCAACGCAGUUGUCGUCAGCUUUCAUGCUAA
..........((.((.(((((....))))).)).(((((((..((((((((...))))))))....(((((..((((...))))..))))))))))))))... ( -16.50)
>DroSec_CAF1 45696 103 + 1
ACUUCGCCAUGCCAUUUUUAUUUUUUUAAAUCUAAUGAAAGAUAAUGAAAUUUUAUUUCGUUUCUUUUGAUUUCAACGCAGUUGUCGUCAGCUUUCAUGCUAA
.....((.........((((......))))....(((((((..((((((((...))))))))....(((((..((((...))))..))))))))))))))... ( -14.60)
>DroYak_CAF1 46922 103 + 1
ACUUCGCCAUGCCACUUUUAUUUUUAUAAAUCUAAUGAAAGAUAAUGAAAUUUUAUUUCGUUUCUUUUGAUUUCAACGCAGUUGUCGUCAGCUUUCAUGCUAA
.....((.........(((((....)))))....(((((((..((((((((...))))))))....(((((..((((...))))..))))))))))))))... ( -15.20)
>DroAna_CAF1 48339 103 + 1
AUUUCUCCACGCCAUUUUUAUUUUUAUAAAUCUAAUGAAAGAUAAUGAAAUUUUAUUUCGUUUCUUUUGAUUUCAGCGCAGUUGUCGUCAGCUUUCAUGCUCA
..........((....(((((....)))))....(((((((..((((((((...))))))))....(((((..((((...))))..))))))))))))))... ( -15.20)
>DroPer_CAF1 50469 103 + 1
AUUUCUCCACGCCAGUUUUAUUUUUAUAAAUCUAAUGAAAGAUAAUGAAAUUUUAUUUCGUUUCUUUUGAUUUCAACGCAGUUGUCGUCAGCUUUCAUGCUAA
..........((.((.(((((....))))).)).(((((((..((((((((...))))))))....(((((..((((...))))..))))))))))))))... ( -16.50)
>consensus
ACUUCGCCACGCCAUUUUUAUUUUUAUAAAUCUAAUGAAAGAUAAUGAAAUUUUAUUUCGUUUCUUUUGAUUUCAACGCAGUUGUCGUCAGCUUUCAUGCUAA
..........((....(((((....)))))....(((((((..((((((((...))))))))....(((((..((((...))))..))))))))))))))... (-14.70 = -14.73 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:42 2006