Locus 7549

Sequence ID 3R_DroMel_CAF1
Location 20,223,512 – 20,223,606
Length 94
Max. P 0.898340
window12182

overview

Window 2

Location 20,223,512 – 20,223,606
Length 94
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 89.58
Mean single sequence MFE -14.67
Consensus MFE -11.50
Energy contribution -11.17
Covariance contribution -0.33
Combinations/Pair 1.16
Mean z-score -3.11
Structure conservation index 0.78
SVM decision value 1.00
SVM RNA-class probability 0.898340
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20223512 94 - 27905053
ACUAUGCAAAUAUAAAAUCGCAAAAUGCGAAAAAAAAA--UUUGAAAAAAUGCGAGAUGCGUGGAAGAACAAUUAGAUGAAAUUCAUUUCAACAAA
.(((((((.........((((.....)))).......(--(((....))))......)))))))...........(.(((((....))))).)... ( -16.50)
>DroSec_CAF1 34810 92 - 1
ACUAUGCAAAUAUAAAAAUGCAAAAAGCGAA----AAACACAUAAAAAUAUGCGAGAUGCGUGGGAGAACAAUUAGAUGAAAUUCAUUUCAACAAA
.(((((((..........(((.....)))..----...(.((((....)))).)...)))))))...........(.(((((....))))).)... ( -13.50)
>DroSim_CAF1 38084 96 - 1
ACUAUGCAAAUAUAAAAAUGCAAAAAGCAAAAAAAAAACACAUAAAAAUAUGCGAGAUGCGUGGAAGAACAAUUAGAUGAAAUUCAUUUCAACAAA
.(((((((..........(((.....))).........(.((((....)))).)...)))))))...........(.(((((....))))).)... ( -14.00)
>consensus
ACUAUGCAAAUAUAAAAAUGCAAAAAGCGAAAAAAAAACACAUAAAAAUAUGCGAGAUGCGUGGAAGAACAAUUAGAUGAAAUUCAUUUCAACAAA
.(((((((..........(((.....)))...........(((......))).....)))))))...........(.(((((....))))).)... (-11.50 = -11.17 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:34 2006