Locus 7546

Sequence ID 3R_DroMel_CAF1
Location 20,215,868 – 20,215,960
Length 92
Max. P 0.640151
window12178

overview

Window 8

Location 20,215,868 – 20,215,960
Length 92
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.60
Mean single sequence MFE -37.86
Consensus MFE -27.48
Energy contribution -27.48
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.04
Structure conservation index 0.73
SVM decision value 0.22
SVM RNA-class probability 0.640151
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20215868 92 + 27905053
UCGAAGUCCUGUGCGUUCCCCUG---UGCGACGACGCUGUGUCCUGGC---GGAGUCAGCGUGACAUUGUUGACUUUGCCGGCUUCGUGACUUGUCGC
..((((((..(((((((.(....---.).)))).)))........(((---((((((((((......)))))))))))))))))))((((....)))) ( -35.70)
>DroSec_CAF1 27136 92 + 1
UCGAAGUCCUGUGCGUUCCCCUG---UGGGACGACGCUGUGUCCUGGC---GGAGUCAGCGUGACAUUGUUGACUUUGCCGGCUUCGUGACUUGUCGC
..((((((..(((((((((....---.)))))).)))........(((---((((((((((......)))))))))))))))))))((((....)))) ( -41.60)
>DroSim_CAF1 28441 92 + 1
UCGAAGUCCUGUGCUUUCCCCUG---UGCGACGACCCUGUGUCCUGGC---GGAGUCAGCGUGACAUUGUUGACUUUGCCGGCUUCGUGACUUGUCGC
..((((((..(..(........)---..)((((......))))..(((---((((((((((......)))))))))))))))))))((((....)))) ( -35.60)
>DroEre_CAF1 27323 92 + 1
UCGAAGUCCUGU---UUCCCCUG---CGCGACGACGCCGAGUCCUGGCGGCGGAGUCAGCGUGACAUUGUUGACUUUGCCGGCUUCGUGACUUGUCGC
..((((((....---........---.((.(.(((.....))).).))(((((((((((((......)))))))))))))))))))((((....)))) ( -37.80)
>DroYak_CAF1 27785 92 + 1
UCGAAGUCCUGU---UUCCCCUGUUGAGCGACGAUGCCGAGUCCUGGC---GGAGUCAGCGUGACAUUGUUGACUUUGCCGGCUUCGUGACUCGUCGC
............---............(((((((..(((((.((.(((---((((((((((......))))))))))))))).)))).)..))))))) ( -38.60)
>consensus
UCGAAGUCCUGUGC_UUCCCCUG___UGCGACGACGCUGUGUCCUGGC___GGAGUCAGCGUGACAUUGUUGACUUUGCCGGCUUCGUGACUUGUCGC
..((((((.....................(((........)))..(((...((((((((((......)))))))))))))))))))((((....)))) (-27.48 = -27.48 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:30 2006