| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,200,871 – 20,200,977 |
| Length | 106 |
| Max. P | 0.952997 |
| Location | 20,200,871 – 20,200,977 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -23.36 |
| Consensus MFE | -15.48 |
| Energy contribution | -15.40 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.952997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20200871 106 - 27905053 ACGCAGCAAUCGGAAUGUUCGAUUGCUCAAUUACACUAGUGAACAAAACUGGGACGCCACUCUUGAGAAUAAAAAAAUAGGCAUAAAAUUGAUUGGUGCCCUAAAA ..(.((((((((((...)))))))))))..((((....))))........(((.(((((.((............................)).))))))))..... ( -24.39) >DroSec_CAF1 12335 96 - 1 ACGCAGCAAUCGGAAUGUUCGAUUGCUCAAUUACACUAGUGAACAAAACUGGGACGCAACUCUUGAAAAUAAAAAAAU----------UGAACUGGUGCCCUUAAA ..((((((((((((...)))))))))((((((...(((((.......)))))((......)).............)))----------))).....)))....... ( -19.60) >DroSim_CAF1 12203 96 - 1 ACGCAGCAAUCUGAAUGUUCGAUUGCUCAAUUACACUAGUGAACAAAACUGGGACACCACUCUUGAAAAUAAAAAAAU----------UUAACUGGUGCCCUGAAA ..(.(((((((.((....))))))))))..((((....))))........(((.(((((...(((((..........)----------)))).))))))))..... ( -20.20) >DroEre_CAF1 12355 91 - 1 ACGCAGCAAUCGGAAUGUUCGAUUGCUCAAUUACACUGGUGAACAAAA--GGGGCACAAUUCGUGAAAAUAAAAAUGGUGGAAC-----------CUGCUCC--AA ..(.((((((((((...)))))))))))..((((....))))......--((((((......((....))......((.....)-----------)))))))--.. ( -22.30) >DroYak_CAF1 12496 102 - 1 ACGCAGCAAUCGGAAUGUUCGAUUGCUCAAUUACACUAGUGAACAAAA--GGGGCACAAUUCGUGAAGAUACGAAUUGAGGAAUAA--GUGAUUGGUGCUCUAAAA ..((((((((((((...)))))))))((((((((....(((..(....--.)..)))((((((((....)))))))).........--)))))))))))....... ( -30.30) >consensus ACGCAGCAAUCGGAAUGUUCGAUUGCUCAAUUACACUAGUGAACAAAACUGGGACACAACUCUUGAAAAUAAAAAAAU_GG_A_____UUAACUGGUGCCCUAAAA ..(.((((((((((...)))))))))))..((((....))))........(((.(((......................................))))))..... (-15.48 = -15.40 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:24 2006