| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,196,455 – 20,196,567 |
| Length | 112 |
| Max. P | 0.555357 |
| Location | 20,196,455 – 20,196,567 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -30.02 |
| Consensus MFE | -20.17 |
| Energy contribution | -21.28 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555357 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20196455 112 - 27905053 ACGCAUCCAAGGCGGACUGUGCCGUCCUCUAUCCGGAGUGCAAGCAGUCCAUGUGGCAGGCCCAGUUCAUACAAUAAACACCCAAUCCCCAAG-CCAGCUUUAAGUUGCCUUU ........((((((((((((...(..((((....))))..)..))))))).((.(((.(((...............................)-)).))).))....))))). ( -28.88) >DroVir_CAF1 10450 106 - 1 AUGCCCAUAAAGGUGACUGUGCUGCUCUCUAUCCCGAGUGCAAGCUGUCCAUCUGGGAUGCACCAUUUAUACAAUAAAGAUA----AGCCAAUUUUUGUUUCAA---UGUUUU ......(((((((((.....(((((.(((......))).)).))).((((.....)))).)))).)))))..(((((((((.----.....)))))))))....---...... ( -22.90) >DroSec_CAF1 7965 112 - 1 ACGCCUCCAAGGCGGACUGUGCCGCCCUCUAUCCGGAGUGCAAGCAGUCCAUGUGGCAGGCCCAGUUUAUACAAUAAACACCCAAUCCCCAAG-UCUGCUUUAAGUUGCCUUU ........((((((((((((...((.((((....)))).))..))))))).((.(((((((...((((((...)))))).............)-)))))).))....))))). ( -33.39) >DroEre_CAF1 8031 112 - 1 ACGCCUCCAAGGCGGACUGUGCCGCCCUCUAUCCGGAGUGCAAACAGUCGAUGUGGCAGGCCCAGUUCAUACAAUAAACACCCACUCCCCAAG-UCUGCUUAAAGUUGCUUUU .((((.....))))((((((...((.((((....)))).))..))))))(((..(((((((...............................)-))))))....)))...... ( -29.58) >DroYak_CAF1 7995 112 - 1 AUGCCACCAAGGCGGACUGUGCCGCCCUCUAUCCGGAGUGCAAGCAGUCCAUGUGGCAGGCCCAGUUCAUACAAUAAACACCCAUUCCCCAAG-UCUGCUCAAAGUUGCUUUU ..(((.....)))(((((((...((.((((....)))).))..))))))).((.(((((((...............................)-))))))))........... ( -30.58) >DroAna_CAF1 8086 111 - 1 ACGCCGCCAAAGAGGACUGCGCCACUCUCUAUCCGGAGUGCAAACAGUCCAUGUGGGCGGCGCAGUUCAUCCAAUAAACCCCCACAUCCCAAG-UCCUUUUUAAUGCG-UUUU ((((....((((((((((((((((((((......))))).......((((....))))))))).(((.........)))............))-))))))))...)))-)... ( -34.80) >consensus ACGCCUCCAAGGCGGACUGUGCCGCCCUCUAUCCGGAGUGCAAGCAGUCCAUGUGGCAGGCCCAGUUCAUACAAUAAACACCCAAUCCCCAAG_UCUGCUUUAAGUUGCUUUU ..(((((((....(((((((...((.(((......))).))..)))))))...))).)))).................................................... (-20.17 = -21.28 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:23 2006