Locus 7539

Sequence ID 3R_DroMel_CAF1
Location 20,188,179 – 20,188,273
Length 94
Max. P 0.899848
window12169

overview

Window 9

Location 20,188,179 – 20,188,273
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 79.79
Mean single sequence MFE -21.26
Consensus MFE -14.48
Energy contribution -14.72
Covariance contribution 0.24
Combinations/Pair 1.30
Mean z-score -2.01
Structure conservation index 0.68
SVM decision value 1.01
SVM RNA-class probability 0.899848
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20188179 94 - 27905053
GAAUGAGGCCCUAUUCAAUGAGGGUCUGAAAUAUUUUAAAGCCACUUUAGGGUAUUUCAAAAUGAUUAAUCUUAUAUUACCUCGAUGUAUAAAA
.....(((((((........)))))))((((((((((((((...))))))))))))))..............((((((.....))))))..... ( -22.30)
>DroSec_CAF1 4562 94 - 1
GAAUGAGGCUCUAUUCAAUGUGGGUCUGAAAUAGUUUAAAGCCACGUUAGAGUAUUUCAAAAUGAUUAAUCUGAGAUUACCUCGAUUCAUAGAA
((((((((...((((((((((((.(.((((....)))).).))))))).)))))(((((............)))))...)))).))))...... ( -21.80)
>DroSim_CAF1 4511 93 - 1
GAAUGAGGCCCUAUUCAAUGUGGGUCUGAAAUA-UUUAAAGCCACAUUAGAGUAUUUCAAAAGAAAUAAUCUGAUAUUACCUCGAUUCAUAGAA
((((((((...........((((.(.(((....-.))).).))))((((((.((((((....)))))).))))))....)))).))))...... ( -23.30)
>DroEre_CAF1 5450 85 - 1
GAAAGAGGCCCUAUUCAAUGAGGGUCUGAAAUAUUUUCAAGCUAUGUUAAAGUCCUUCAAAAUUAUUCAUUUAAUUUUACCUCGU---------
....((((...........(((((.((..(((((.........)))))..)).)))))(((((((......))))))).))))..--------- ( -18.20)
>DroYak_CAF1 4795 94 - 1
GAAUGGGGCCCUGUUUAAUGUGGGUCUGAAAUAUUUUAGAGCAACGUUGGAGUCUUUCAAAGUUAUCUAUCUGAUUUUACCUCGAUUGGUAGAC
...(.((((((..........)))))).).......((((..(((.(((((....))))).))).))))......((((((......)))))). ( -20.70)
>consensus
GAAUGAGGCCCUAUUCAAUGUGGGUCUGAAAUAUUUUAAAGCCACGUUAGAGUAUUUCAAAAUGAUUAAUCUGAUAUUACCUCGAUUCAUAGAA
....(((((((..........)))..(((((((((((((.......)))))))))))))....................))))........... (-14.48 = -14.72 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:21 2006