Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,182,455 – 20,182,572 |
Length | 117 |
Max. P | 0.592680 |
Location | 20,182,455 – 20,182,572 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.32 |
Mean single sequence MFE | -43.45 |
Consensus MFE | -28.12 |
Energy contribution | -26.65 |
Covariance contribution | -1.47 |
Combinations/Pair | 1.41 |
Mean z-score | -1.26 |
Structure conservation index | 0.65 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20182455 117 + 27905053 CUCGUAAUCGCUCUUGGCUCCCGUGUUGGCUUCCUCGCUCAAUCGCUGACGCAUCUGCUGAAGCUGCUGCUCCCGCUCCUGGAGUCGAGUGGCGGCAGCAGCCAUUUGGUUACUAAG ...((((((....(..((....((((..((..............))..))))....))..).(((((((((.((((((........)))))).))))))))).....)))))).... ( -46.74) >DroPse_CAF1 8192 117 + 1 CUCGUAGUCGUUCUUGGCACUGGUGUGGACCUCACCGCUGAGGCGCUGGCGCAGCUGUUGUACCUGUUGCUCCCGUUCUUGCAGGCGAGUGGCAGCAGCGGCCAUCUGAUUGCUAAG ...((((((.......((.(..(((....(((((....))))))))..).)).(((((((...((((..(((((((....)).)).)))..))))))))))).....)))))).... ( -45.10) >DroGri_CAF1 10514 117 + 1 CUCAUAGUCAUUUUUGGCACUUGUAAAGCCCGUUUCGCUAACAAGCUGACGCUGCUGUUGCAAUUGUUUCUCCUUUUCCUGCAAUCGUGUUGCGGCGGCAGCCAUUUGAUUGCUCAU ....((((((....((((.(((((..(((.......))).))))).....((((((((.((((((((.............)))))..))).)))))))).))))..))))))..... ( -33.72) >DroSim_CAF1 7820 117 + 1 CUCGUAAUCGUUCUUGGCUCCCGUGUUGGCUUCCUCGCUCAACCGCUGACGCAUCUGCUGAAGCUGCUGCUCCCGCUCCUGGAGGCGAGUGGCAGCAGCAGCCAUUUGGUUGCUAAG ............((((((..((((((..((..............))..))))..........(((((((((.(((((((.....).)))))).))))))))).....))..)))))) ( -47.44) >DroAna_CAF1 7151 117 + 1 CUCGUAGUCGUUUUUGGCUCCGGCAUUGGCACCCUCACUAAGCCGCUGCCGCAUCUGCUGUAGUUGCUGCUCCCGCUCCUGGAGGCGAGUGGCGGAGGCUGCCAUUUGGUUACUCAG .(((.(((((....))))).)))((.(((((.((((....(((.(((((.((....)).))))).)))((..(((((......)))).)..)).)))).)))))..))......... ( -42.60) >DroPer_CAF1 8211 117 + 1 CUCGUAGUCGUUCUUGGCACUGGUGUGGACCUCACCGCUGAGGCGCUGGCGCAGCUGUUGUACCUGUUGCUCCCGUUCUUGCAGGCGAGUGGCAGCAGCGGCCAUCUGAUUGCUAAG ...((((((.......((.(..(((....(((((....))))))))..).)).(((((((...((((..(((((((....)).)).)))..))))))))))).....)))))).... ( -45.10) >consensus CUCGUAGUCGUUCUUGGCACCGGUGUUGGCCUCCUCGCUAAGCCGCUGACGCAGCUGCUGUAGCUGCUGCUCCCGCUCCUGCAGGCGAGUGGCAGCAGCAGCCAUUUGAUUGCUAAG ...(((((((....((((..........................((....))...(((((...((((..(((((.........)).)))..)))))))))))))..))))))).... (-28.12 = -26.65 + -1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:17 2006