Locus 7534

Sequence ID 3R_DroMel_CAF1
Location 20,158,726 – 20,158,820
Length 94
Max. P 0.701541
window12161

overview

Window 1

Location 20,158,726 – 20,158,820
Length 94
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 79.45
Mean single sequence MFE -27.37
Consensus MFE -14.82
Energy contribution -14.69
Covariance contribution -0.13
Combinations/Pair 1.38
Mean z-score -2.03
Structure conservation index 0.54
SVM decision value 0.35
SVM RNA-class probability 0.701541
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20158726 94 + 27905053
UGUUCCUC---GGUUUCGUAGCUCAGAAGGUUCUCUUUUACUUUCGGCGCCUUCUUCACCUUCUUCUGCGAGGCACCGAAAACCUGUGGG----ACAGAAA
((((((.(---((((((........((((((........))))))((.(((((...((........)).))))).))).))))).).)))----))).... ( -27.30)
>DroGri_CAF1 7393 89 + 1
UUUUCAUUGUCGGUUU------------GUUUAUCCUUUGGCUUUGGCGCCUUCUUUAUCUUUUUCUGGGUGGCACCAAAAAUCUGCAAGAAAACCGGAAA
(((((.((((.(((((------------(((........))).((((.(((.(((............))).))).))))))))).)))))))))....... ( -18.30)
>DroSec_CAF1 7262 94 + 1
UGUUCCUC---GGUUUCGGAGCUCAGGAAGUUCUCUUUUACUUUCGGCGCCUUCUUCACCUUCUUCUGGGAGGCACCGAAAACCUGUGGG----ACAGAAA
((((((.(---((((((((.(((..((((((........)))))))))(((((((............))))))).))).))))).).)))----))).... ( -35.30)
>DroSim_CAF1 6554 94 + 1
UGUUCCUC---GGUUUCGGAGCUCAGGAAGUUCUCUUUUACUUUCGGCGCCUUCUUCACCUUCUUCUGCGAGGCACCGAAAACCUGUGGG----ACAGAAA
((((((.(---((((((((.(((..((((((........)))))))))(((((...((........)).))))).))).))))).).)))----))).... ( -30.90)
>DroEre_CAF1 7278 94 + 1
UGUUCCUC---GGUUUCGUCGCUCAGGAAGUUGUCUUUCACUUUCGGAGCCUUUUUCACCUUCUUCUGCGAGGCACCAAAAACCUGUGGG----ACAUAAA
((((((.(---(((((....((((.((((((........)))))).)))).........((((......))))......))))).).)))----))).... ( -24.90)
>DroYak_CAF1 7396 94 + 1
UGUUCCUC---GGUUUCCUCGCUCAGGAAAUUGUCUUUCACCUUCGGUGCCUUUUUCACCUUCUUUUGCGAGGCACCAAAAACCUGUGGG----ACCGCAA
.(((((.(---(((((((((((..(((((..((.....((((...)))).......))..)))))..))))))......))))).).)))----))..... ( -27.50)
>consensus
UGUUCCUC___GGUUUCGUAGCUCAGGAAGUUCUCUUUUACUUUCGGCGCCUUCUUCACCUUCUUCUGCGAGGCACCAAAAACCUGUGGG____ACAGAAA
.....(((...(((((.........((((((........))))))((.(((((................))))).))..)))))...)))........... (-14.82 = -14.69 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:13 2006