Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,149,059 – 20,149,164 |
Length | 105 |
Max. P | 0.516082 |
Location | 20,149,059 – 20,149,164 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 89.33 |
Mean single sequence MFE | -34.03 |
Consensus MFE | -30.37 |
Energy contribution | -30.10 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.30 |
Mean z-score | -1.25 |
Structure conservation index | 0.89 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20149059 105 - 27905053 UCUUCCACAUUCGAGUAGCUCGUGUCGCCGGACGAGUUGCUGGACACAUCUUCCUCCUCUUCCUCGGGUGGCGGCGCUACCUCAUCGUAGUGCUCCGGCUCCUGA ..........((.((((((((((........)))))))))).))...................(((((.(.(((((((((......)))))))..)).).))))) ( -35.70) >DroSec_CAF1 8115 105 - 1 UCUUCCACAUUCGAGUAGCUGGUGUCGCCGGAUGAGUUGCUGGACACUUCUUCCUCCUCUUCCUCGGGUGGCUGCGCUACCUCAUCGUAGUGCUCCGGCUCCUGA .............((.((((((.((((((.((.(((..(..(((.......)))..)..))).)).)))))).(((((((......))))))).)))))).)).. ( -36.50) >DroSim_CAF1 8108 105 - 1 UCUUCCACAUUCGAGUAGCUGGUGUCGCCGGAUGAGUUGCUGGACACUUCUUCCUCCUCUUCCUCGGGUGGCUGCGCUACCUCAUCGUAGUGCUCCGGCUCCUGA .............((.((((((.((((((.((.(((..(..(((.......)))..)..))).)).)))))).(((((((......))))))).)))))).)).. ( -36.50) >DroEre_CAF1 8163 105 - 1 UCCUCCACAUUCGAGUAGCUGGUGUCGCCAGAUGAGUUGCUGGACACUUCUUCCUCCUCUUCCUCGGGCGGCGGCGCUACCUCAUCGUAGCGCUCUGGCUCCUGA .............((.(((..(.((((((.((.(((..(..(((.......)))..)..))).)).))))))((((((((......)))))))))..))).)).. ( -37.20) >DroYak_CAF1 8180 105 - 1 UCCUCCACAUUCGAGUAGCUGGUGUCGCCGGACGAGUUGCUGGACACUUCUUCUUCCUCUUCCUCAGGCGGCGGCGCUAUCUCAUCGUAGCGCUCUGGCUCCUGA .............((.(((..(.(((((((((.(((..(..(((....)))..)..))).)))...))))))((((((((......)))))))))..))).)).. ( -36.30) >DroAna_CAF1 8275 105 - 1 UCCUCUACAUUCGAGUAGCUGGUGUCCCCGGAUGAGUUGCUAGACACAUCCUCUUCCUCCUCCUCGUGCGGCUGAGCCUCUUCAUCGUAAUUGUCUUGUUCCUGG .((...(((..((((.((..((.......(((((.(((....))).)))))....))..)).))))(((((.((((....))))))))).......)))....)) ( -22.00) >consensus UCCUCCACAUUCGAGUAGCUGGUGUCGCCGGAUGAGUUGCUGGACACUUCUUCCUCCUCUUCCUCGGGCGGCGGCGCUACCUCAUCGUAGUGCUCCGGCUCCUGA .............((.((((((.((((((.((.(((..(..(((.......)))..)..))).)).)))))).(((((((......))))))).)))))).)).. (-30.37 = -30.10 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:12 2006