Locus 7532

Sequence ID 3R_DroMel_CAF1
Location 20,148,713 – 20,148,812
Length 99
Max. P 0.506469
window12159

overview

Window 9

Location 20,148,713 – 20,148,812
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.46
Mean single sequence MFE -30.40
Consensus MFE -15.81
Energy contribution -16.98
Covariance contribution 1.17
Combinations/Pair 1.17
Mean z-score -1.80
Structure conservation index 0.52
SVM decision value -0.05
SVM RNA-class probability 0.506469
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20148713 99 + 27905053
CAGAACCUGCAGCCGAACCUGGCCAGGC---ACAAGUCCAACAGGCGCUGCCUCUGAAAUUCAUCCGUCGCACUUAUGUGCGUCCCAUGAAGUAUCCCCAGU
((((....(((((....((((....(((---....)))...)))).))))).))))...(((((..(.(((((....))))).)..)))))........... ( -29.30)
>DroVir_CAF1 8132 90 + 1
UCGAAC------------CUCGGCUGGCAUUACCUGCCCAACAGGCAAUGCCUUUGAAAUUUGUGCGUCGCACCUACGUGCGUCCCAUGAAGUAUGCGCAAC
......------------.((((..((((((.((((.....)))).)))))).))))...(((((((((((((....)))))...........)))))))). ( -28.50)
>DroSec_CAF1 7769 99 + 1
CAGAACCUGCAGCCGAACCUGGCCAGGC---ACAACUCCAACAGGCGCUGCCUCUGAAAUUCAUCCGUCGCACUUAUGUGCGUCCCAUGAAGUAUCCCCAGU
((((....(((((....((((...((..---....))....)))).))))).))))...(((((..(.(((((....))))).)..)))))........... ( -27.80)
>DroSim_CAF1 7762 99 + 1
CAGAACCUGCAGCCGAACCUGGCCAGGC---ACAAGUCCAACAGGCGCUGCCUCUGAAAUUCAUCCGUCGCACUUAUGUGCGUCCCAUGAAGUAUCCCCAGU
((((....(((((....((((....(((---....)))...)))).))))).))))...(((((..(.(((((....))))).)..)))))........... ( -29.30)
>DroEre_CAF1 7817 99 + 1
CUGAACCGGUAGCCGAUCCUGGCCAGGC---ACCAGUCCAACAGGCGCUACCUCUAAAGUUCAUCCGACGCACUUAUGUGCGUCCCAUGAAGUAUCCCCAGU
(((....((((((....((((....(((---....)))...)))).)))))).....(.(((((..(((((((....)))))))..))))).).....))). ( -34.20)
>DroAna_CAF1 7932 93 + 1
CAGAGCCGGCAGC------UGGCCAAGC---UCCCGCCCAGCAGCCGCUUCCGCUUAAGUUUGUUCGCCGCACCUAUGUGCGGCCCAUGAAAUAUGCCCAGC
..((((.(((.((------(((....((---....))))))).)))))))..((.....((..(..(((((((....)))))))..)..))....))..... ( -33.30)
>consensus
CAGAACCUGCAGCCGAACCUGGCCAGGC___ACAAGUCCAACAGGCGCUGCCUCUGAAAUUCAUCCGUCGCACUUAUGUGCGUCCCAUGAAGUAUCCCCAGU
........(((((....((((....(((.......)))...)))).)))))........(((((..(.(((((....))))).)..)))))........... (-15.81 = -16.98 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:11 2006