| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,148,409 – 20,148,507 |
| Length | 98 |
| Max. P | 0.506137 |
| Location | 20,148,409 – 20,148,507 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 80.07 |
| Mean single sequence MFE | -34.05 |
| Consensus MFE | -21.42 |
| Energy contribution | -21.81 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20148409 98 + 27905053 C------CGCCAGCCGCAUUGC--CCCCUGCUGCUGCUGGAGGACCACAGGGAGCUAACUACUCCCAUAUCGACCGCAUGAUUGCAGCCUUGGCCAAUCGGCAGUC (------(.(((((.(((..((--.....))))).))))).))......(((((.......))))).....(((.((.((((((..((....)))))))))).))) ( -36.00) >DroGri_CAF1 7609 99 + 1 -UGGCGCCGUUGGCGGAGUUGAUGCAGCCGCUGCAGCUGGUG-----CA-GGCGGCAAUUAUUCCCAUAUUGAUCGCAUGAUUGCUGCACUUGCCAAUCGUCGGGG -.((((..(((((((.(((...((((.(.((....)).).))-----))-.(((((((((((.(...........).))))))))))))))))))))))))).... ( -35.40) >DroSec_CAF1 7465 98 + 1 C------CACCAGCAGCGUUGC--CCCUUGCUGCUGCUGGAGGACCACAGGGAGCUAACUACUCUCAUAUCGACCGCAUGAUUGCAGCCUUGGCCAAUCGGCAGUC (------(.(((((((((..((--.....))))))))))).))......(((((.......))))).....(((.((.((((((..((....)))))))))).))) ( -36.40) >DroSim_CAF1 7458 98 + 1 C------CACCAGCAGUGUUGC--CCCCUGCUGCUGCUGGAGGACCACAGGGAGCUAACUACUCUCAUAUCGACCGCAUGAUUGCAGCCUUGGCCAAUCGGCAGUC (------(.((((((((...((--.....)).)))))))).))......(((((.......))))).....(((.((.((((((..((....)))))))))).))) ( -34.70) >DroEre_CAF1 7513 98 + 1 C------CACCAGCAGCAUUGC--CUUCCGUUCCUGUUGGAGGACCACAGGGAGCUAACUACUCCCAUAUCGACCGCAUGAUUGCAGCCCUGGCCAAUCGGCAGUC (------(.(((((((....((--.....))..))))))).))......(((((.......))))).....(((.((.((((((..((....)))))))))).))) ( -31.70) >DroYak_CAF1 7530 98 + 1 C------CGCCCGCAGCAUUGC--CACCAGUGCCUGUUGGAGGACCACAUGGAGCUAACUACUCCCAUAUCGACCGCAUGAUUGCAGCCCUGGCCAAUCGGCAGUC (------(.((.(((((((((.--...))))).)))).)).)).......((((.......))))......(((.((.((((((..((....)))))))))).))) ( -30.10) >consensus C______CACCAGCAGCAUUGC__CCCCUGCUGCUGCUGGAGGACCACAGGGAGCUAACUACUCCCAUAUCGACCGCAUGAUUGCAGCCCUGGCCAAUCGGCAGUC .........(((((((.................))))))).........(((((.......))))).....(((.((.((((((..((....)))))))))).))) (-21.42 = -21.81 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:10 2006