Locus 7530

Sequence ID	3R_DroMel_CAF1
Location	20,144,249 – 20,144,339
Length	90
Max. P	0.637995

overview

Window 7

Location	20,144,249 – 20,144,339
Length	90
Sequences	4
Columns	93
Reading direction	reverse
Mean pairwise identity	72.68
Mean single sequence MFE	-18.50
Consensus MFE	-9.31
Energy contribution	-10.25
Covariance contribution	0.94
Combinations/Pair	1.41
Mean z-score	-1.90
Structure conservation index	0.50
SVM decision value	0.22
SVM RNA-class probability	0.637995
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20144249 90 - 27905053
UUUGAAGUUAUGUUGC-ACUUCAGUUCAUGGCCAUGGCCAGGAGCAUUUUUAA--AUUUCAGAAGUUUUUAAUUUGCCAUUUUAAUUUCAAAU
((((((((((.((.((-(.....((((.((((....)))).))))((((((..--.....))))))........))).))..)))))))))). ( -21.70)
>DroSec_CAF1 3287 90 - 1
UUUCAAGCUAUGUUGC-ACUUCAUUCCGUAGCCAUGGCCAGGACAAUUUUUGA--AUUUCAGAUGUUUUUAAUUUGCAAUUUUAAUUUGAAAC
(((((((.((.(((((-(......(((...((....))..))).(((.((((.--....)))).))).......))))))..)).))))))). ( -16.60)
>DroSim_CAF1 3286 91 - 1
UUUCAAGUUAUGUUGCUACUUCAUUCCGUAGCCAUGCCCAGGACAAUAUUUGA--AUUUCAGAUGUUUUUAAUUUGCAAUUUUAAUUUGAAAC
((((((((((....(((((........)))))..(((....((.((((((((.--....)))))))).)).....)))....)))))))))). ( -20.80)
>DroEre_CAF1 3308 89 - 1
UUUGAAGUUAUACUGC-GCUUUAUUCUGGGUGAAUGGCAAGGACAAUUUUAAAUAGUAUAUAGUAUUAUAGUAUAGU-AUU--AACUAUAAAA
.((((((((...((..-(((..((((.....))))))).))...))))))))(((((...(((((((((...)))))-)))--)))))).... ( -14.90)
>consensus
UUUCAAGUUAUGUUGC_ACUUCAUUCCGUAGCCAUGGCCAGGACAAUUUUUAA__AUUUCAGAUGUUUUUAAUUUGCAAUUUUAAUUUGAAAC
((((((((((.(((((........(((...((....))..))).(((((((((.....)))))))))........)))))..)))))))))). ( -9.31 = -10.25 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:09 2006