| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,141,066 – 20,141,186 |
| Length | 120 |
| Max. P | 0.816797 |
| Location | 20,141,066 – 20,141,186 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.72 |
| Mean single sequence MFE | -28.16 |
| Consensus MFE | -24.90 |
| Energy contribution | -23.85 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20141066 120 - 27905053 CAUCCAAACUGCACAAAGCAGUUCUGUGAGUACUAUCAUCCAACGGCGCCGUGCAAGUCUUUCCCCAACUGCAAAUUCGCGGACAAGUGCAUGUACUCGCAUCCGAAGUGCAAAUUCGAC ......((((((.....)))))).(((((((((...(((....(.(((...((((.((.........))))))....))).)....)))...)))))))))..((((.......)))).. ( -31.20) >DroVir_CAF1 158 120 - 1 CAUCCCAAUUGCAGCAAACAAUUUUGCGAAUAUUAUCAUCCAUCGGCACCAUGCAAAUCCUUUCCCAACUGCAAAUUUGCUGACAAGUGCAUGUAUUCGCAUCCAAAGUGUAAAUUCGAU .............(((........(((((((((...(((...((((((...((((..............))))....))))))...)))...))))))))).......)))......... ( -23.70) >DroPse_CAF1 91 120 - 1 CAUCCGAGCUGCACAAAACAAUUCUGCGAGUACUACCAUCCGACAGCGCCGUGUAAGUCUUUUCCCAAUUGCAAGUUUGCCGACAAAUGCAUGUACUCGCAUCCCAAGUGCAUGUACGAU ....((.(((((((..........(((((((((...(((..(.(.(((...(((((............)))))....))).).)..)))...)))))))))......))))).)).)).. ( -27.19) >DroGri_CAF1 91 120 - 1 CAUCCAAAUUGCAGCAAACAAUUCUGCGAAUAUUAUCAUCCAUCGGCGCCGUGCAAAUCGUUUCCCAACUGCAAAUUCGCCGACAAGUGCAUGUACUCGCACCCCAAGUGCAAAUUUGAU ....((((((...(((........(((((.(((...(((...((((((...((((..............))))....))))))...)))...))).))))).......))).)))))).. ( -29.00) >DroWil_CAF1 94 120 - 1 CAUCCAAAUUGCACAAAACAAUUCUGUGAAUAUUAUCAUCCAACGGCGCCAUGCAAAACAUUUCCCAAUUGCAAGUUUGCCGAUAAAUGCAUGUAUUCGCAUCCAAAGUGCAAAUAUGAU ........((((((..........(((((((((...(((....(((((.(.(((((............))))).)..)))))....)))...)))))))))......))))))....... ( -25.39) >DroAna_CAF1 91 120 - 1 CAUCCUAGCUGCACAAAGCAGUUCUGCGAGUACUAUCACCCCACGGCGCCGUGCAAGUCCUUUCCAAACUGCAAGUUUGCCGACAAGUGCAUGUAUUCGCAUCCAAAGUGCAAGUUCGAC ......((((((.....)))))).(((((((((...(((....(((((...((((.((.........))))))....)))))....)))...)))))))))................... ( -32.50) >consensus CAUCCAAACUGCACAAAACAAUUCUGCGAAUACUAUCAUCCAACGGCGCCGUGCAAAUCCUUUCCCAACUGCAAAUUUGCCGACAAGUGCAUGUACUCGCAUCCAAAGUGCAAAUUCGAU .........(((((..........(((((((((...(((....(((((...((((..............))))....)))))....)))...)))))))))......)))))........ (-24.90 = -23.85 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:08 2006