| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,135,399 – 20,135,505 |
| Length | 106 |
| Max. P | 0.508715 |
| Location | 20,135,399 – 20,135,505 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.88 |
| Mean single sequence MFE | -21.58 |
| Consensus MFE | -11.00 |
| Energy contribution | -9.45 |
| Covariance contribution | -1.55 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.51 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20135399 106 - 27905053 UUCAAUAUUAAUUGUAAUUCUUUAACUAUCAU--AUAUUUAAUAAUUUACCCCGUCAUUGCAAUUUCCGUGCUUGCUGCAUGGAUUACUGUCGCACUCAUUAAUGUUG ..((((((((((.((((....((((.(((...--))).))))....))))........(((.((.(((((((.....))))))).....)).)))...)))))))))) ( -19.00) >DroVir_CAF1 18077 104 - 1 AUUAAGUUUCGC-GUCA--C-UUUGUUAGCCUAAUAAUUGAUGCACUUACUCCAUCAUUGCAGGUGCCGUGCUUGGUGCACGGAUUACUCUCGCAUUCAUUUAUAUUG ..(((((...((-((((--.-.((((((...)))))).))))))))))).........((((((((((((((.....))))))..))).)).)))............. ( -25.60) >DroSec_CAF1 4441 106 - 1 UUCAAUAUUAAUUCUCAUUCUUCAAAUAUCAU--AAAUUUGAUAACUUACCCCGUCAUUGCAAUUUCCGUGUUUGCUGCAUGGAUUACUGUCGCACUCAUUAAUGUUG ..((((((((((..............(((((.--.....)))))..............(((.((.(((((((.....))))))).....)).)))...)))))))))) ( -19.60) >DroSim_CAF1 4399 106 - 1 UUCAAUAUUAAUUUUCAUUCUUUAAAUAUCAU--AAAUUUAAUAACUUACCCCGUCAUUGCAAUUUCCGUGUUUGCUGCAUGGAUUACUGUCGCACUCAUUAAUGUUG ..((((((((((.........((((((.....--..))))))................(((.((.(((((((.....))))))).....)).)))...)))))))))) ( -16.40) >DroEre_CAF1 4521 105 - 1 UUCAAUAUUAAAUCACAUGGUUUA-AGAUCCU--GAGUUUGGUAACUUACCCCAUCAUUGCAGUUUCCGUGCUUGCUGCAGGGAUUACUGUCGCACUCAUUAAUGUUG ..(((((((((.....((((..((-((..((.--......))...))))..))))....(((((.(((.(((.....))).)))..)))))........))))))))) ( -28.20) >DroYak_CAF1 4402 106 - 1 UUGAAUAUUAAAUCUCAUGGUUUAUAAAUCCU--UAGUUUGGUAACUCACUCCAUCAUUGCAGUUUCCGUGCUUACUGCAAGGAUUACUGUCGCAUUCAUUAAUGUUG ...((((((((.....((((.........((.--......)).........))))....(((((.(((.(((.....))).)))..)))))........)))))))). ( -20.67) >consensus UUCAAUAUUAAUUCUCAUUCUUUAAAUAUCAU__AAAUUUAAUAACUUACCCCAUCAUUGCAAUUUCCGUGCUUGCUGCAUGGAUUACUGUCGCACUCAUUAAUGUUG .....((((((...........................))))))..............(((.((.(((((((.....))))))).....)).)))............. (-11.00 = -9.45 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:07 2006