| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,133,321 – 20,133,414 |
| Length | 93 |
| Max. P | 0.524790 |
| Location | 20,133,321 – 20,133,414 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.69 |
| Mean single sequence MFE | -22.21 |
| Consensus MFE | -16.80 |
| Energy contribution | -17.13 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20133321 93 - 27905053 --------GACAAA----UG--------UAUGCCAAACCUGUGUAUCCACUAGCACAAAUACAGGAAUAAUUGCCACUAUAGCCCAGGCAGGUGCCACCGUUCAAGCAGUUUU --------......----..--------.........(((((((..............)))))))...((((((.......((....)).((.....))......)))))).. ( -16.04) >DroVir_CAF1 15259 94 - 1 ---------GUUGU----UGUU------GUUGCCAAACCUGUGUAUCCACUAGCACAUAUACAGGUAUAAUUGUUACUAUAUCCUAGGCAGGUGCCACCAUUCAAGCAAUUUU ---------...((----((((------..((((..((((((((((..........)))))))))).....(((....))).....))))((.....)).....))))))... ( -20.00) >DroPse_CAF1 19682 105 - 1 UAUAUAUGUACAUAUGUAUA--------UAUGCCAAACCUGUGUAUCCACUAGCACAUAUACAGGUAUAAUUGCUACUAUAUCCCAGGCAGGUGCCACCGUUCAAGCAGUUUU ..(((((((((....)))))--------))))....((((((((((..........))))))))))..(((((((...........(((....)))........))))))).. ( -25.51) >DroGri_CAF1 3931 94 - 1 ---------GGUAG----UGUU------GUUGCCAAACCUGUGUAUCCACUAGCACAUAUACAGGUAUAAUUGUUUCUAUAUCCUAGGCAGGUGCCACCGUUCAAGCAAUUUU ---------(((((----....------.)))))..((((((((((..........))))))))))..((((((((..((......(((....)))...))..)))))))).. ( -21.30) >DroAna_CAF1 2541 101 - 1 --------GGGAAU----UGUGUGGGGAUAUGCCAAACCUGUGUAUCCACUAGCACAUAUACAGGUAUAAUUGCUACUAUAGCCCAGGCAGGUGCCACCGUUCAAGCAGUUAU --------..((((----.(.((((.(...((((..((((((((((..........))))))))))......((((...))))...))))..).))))))))).......... ( -28.90) >DroPer_CAF1 19925 101 - 1 UAUAUAUGUACAUA----UA--------UAUGCCAAACCUGUGUAUCCACUAGCACAUAUACAGGUAUAAUUGCUACUAUAUCCCAGGCAGGUGCCACCGUUCAAGCAGUUUU (((((((....)))----))--------))......((((((((((..........))))))))))..(((((((...........(((....)))........))))))).. ( -21.51) >consensus _________ACAAA____UG________UAUGCCAAACCUGUGUAUCCACUAGCACAUAUACAGGUAUAAUUGCUACUAUAUCCCAGGCAGGUGCCACCGUUCAAGCAGUUUU ..............................(((...((((((((((..........))))))))))....................(((....))).........)))..... (-16.80 = -17.13 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:05 2006