Locus 7524

Sequence ID 3R_DroMel_CAF1
Location 20,131,595 – 20,131,709
Length 114
Max. P 0.847111
window12151

overview

Window 1

Location 20,131,595 – 20,131,709
Length 114
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.14
Mean single sequence MFE -30.00
Consensus MFE -19.18
Energy contribution -20.10
Covariance contribution 0.92
Combinations/Pair 1.22
Mean z-score -2.04
Structure conservation index 0.64
SVM decision value 0.77
SVM RNA-class probability 0.847111
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20131595 114 + 27905053
---UU-AUCUUUCUUCUCCAGCCAACUCCACGUACAACAGUCAGUUCCUGACUAACCAGGACAUUGGCUACAAGGACGCCAUCUUGAUACUGGGAAACUCCUUCUCCGGUUGCCUUCU
---..-............(((((....(((.(((....((((((((((((......))))).))))))).(((((......))))).))))))(((.....)))...)))))...... ( -26.70)
>DroVir_CAF1 12444 117 + 1
UAUUU-CUGUAUUAAUUGCAGCCAACUCGACGUACAACAGCCAGUUUCUCACCAAUCAGGACAUCGGCAACGAGUUGGCCAUACUGAUAUUGGGCAAUUCGUUCUCGGGCUGCCUGCU
.....-...........((((.((.(((((.........(((.((.(((.........))).)).)))(((((((((.(((.........))).))))))))).))))).)).)))). ( -33.80)
>DroEre_CAF1 691 110 + 1
---UU-CUCC----UCCCCAGCCAACUCCACGUACAACAGCCAGUUCCUGACGAACCAGGACAUCGGCUACAAGGACGCCAUCUUGAUCUUGGGAAACUCCUUCUCCGGCUGUCUGCU
---..-....----....(((((...............((((.(((((((......))))).)).)))).(((((......))))).....(((((.....))).)))))))...... ( -26.80)
>DroYak_CAF1 642 114 + 1
---UU-GUUCUCCUUCCACAGCCAACUCCACGUACAACAGCCAGUUCCUGACGAACCAGGACAUCGGCUACAAGGACGCCAUCUUGAUACUGGGCAACUCCUUCUCCGGCUGCCUCCU
---..-............(((((...............((((.(((((((......))))).)).))))..(((((.(((............)))...)))))....)))))...... ( -28.50)
>DroMoj_CAF1 11898 118 + 1
CUUUUCCUUUCGUAAUUGCAGCUAAUUCGACGUACAACAGCCAGUUCCUUACCAAUCAGGACAUUGGCAACGAGUUGGCCAUAUUGAUAUUGGGCAACUCCUUCUCGGGCUGCCUGCU
...........(((...((((((....(((.........((((((((((........)))).))))))...((((((.(((.........))).))))))....))))))))).))). ( -36.00)
>DroAna_CAF1 774 111 + 1
---UU----UUUAACCCCCAGCCAACUCCACGUACAACAGCCAGUUCCUGACCAACCAGGACAUUGGCUAUAAGGAUGCCAUCUUGAUAUUGGGCAACUCCUUCUCCGGAUGCCUUCU
---..----...........((....(((.........((((((((((((......))))).)))))))..(((((((((............))))..)))))....))).))..... ( -28.20)
>consensus
___UU_CUCUUUCAUCCCCAGCCAACUCCACGUACAACAGCCAGUUCCUGACCAACCAGGACAUCGGCUACAAGGACGCCAUCUUGAUAUUGGGCAACUCCUUCUCCGGCUGCCUGCU
..................(((((................(((.(((((((......))))).)).)))...(((((.(((............)))...)))))....)))))...... (-19.18 = -20.10 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:03 2006