| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,130,435 – 20,130,534 |
| Length | 99 |
| Max. P | 0.627264 |
| Location | 20,130,435 – 20,130,534 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.78 |
| Mean single sequence MFE | -25.48 |
| Consensus MFE | -17.01 |
| Energy contribution | -17.74 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20130435 99 + 27905053 -CAGAGAGCAAUGGACAGAGACGCAGCGAAA------AUGCUGAAC-----UGAACAGCACUGGGAAA--AUGUAAGCCAAAGUAAACCAAUUGUCCAUUUGCCGUG-------UGCCAA -((.(..(((((((((((((...((((....------..))))..)-----).....((..(((....--.......)))..)).......))))))).))))..).-------)).... ( -20.20) >DroSec_CAF1 18690 106 + 1 -CUGAAAGCAAUGGACAGAGACGCGGCGAAA------AUGCUGAACUGAACUGAACAGCACUGGGAAAAUAUGUAAGCCAAAGUAAACCAAUUGGCCAUUUGCCGUG-------UGCCAA -..........(((......((((((((((.------.(((((..(......)..)))))................(((((..........)))))..)))))))))-------).))). ( -26.10) >DroSim_CAF1 14469 106 + 1 -CGGAGAGCAAUGGACAGAGACGCGGCGAAA------AUGCUGAACUGAACUGAACAGCACUGGGAAACUAUGUAAGCCAAAGUAAACCAAUUGGCCAUUUGCCGUG-------UGCCAA -..........(((......((((((((((.------..((((..(......)..))))(((((....))).))..(((((..........)))))..)))))))))-------).))). ( -28.90) >DroEre_CAF1 14747 99 + 1 -CGGAGAGCAAUGGACAGAGACACGGCGAGA------AGGCUGAAC-----UGAACAGCAGUAGGAAA--AUGUAAGCCAAAGUAAACCAAUUGGCCAUUUGCCGUG-------UGCCAA -..........(((......((((((((((.------.(((..(((-----((.....)))).((...--.......))............)..))).)))))))))-------).))). ( -26.20) >DroYak_CAF1 14807 112 + 1 -CGGAGAGCAAUGGACAGAGACGCGGCGAAAAUGAAAAUGCUGAAC-----UAAACAGCAGUGGGAAA--AUGUAAGCCAAAGUAAACCAAUUGGCCAUUUGCCGUGUGCUGUGUGCCAA -..........((((((.((((((((((((........(((((...-----....)))))........--......(((((..........)))))..)))))))))).)).))).))). ( -34.80) >DroAna_CAF1 13971 85 + 1 CCGGAGAGCAAUGAACAAAGAA------AUA------GUGCUGAAA---------UGGCAGUGGGAAA--AUGUAAGCCAAAGUAAACCAAUUGGCCAAAUG------------CGCCAA ..((...(((....(((.....------.((------.((((....---------.)))).)).....--.)))..(((((..........)))))....))------------).)).. ( -16.70) >consensus _CGGAGAGCAAUGGACAGAGACGCGGCGAAA______AUGCUGAAC_____UGAACAGCACUGGGAAA__AUGUAAGCCAAAGUAAACCAAUUGGCCAUUUGCCGUG_______UGCCAA ...........(((.......(((((((((........(((((............)))))................(((((..........)))))..))))))))).........))). (-17.01 = -17.74 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:02 2006