| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,115,978 – 20,116,089 |
| Length | 111 |
| Max. P | 0.500000 |
| Location | 20,115,978 – 20,116,089 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.57 |
| Mean single sequence MFE | -45.03 |
| Consensus MFE | -32.01 |
| Energy contribution | -30.97 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20115978 111 + 27905053 GAUUUGAGGAACGCCGACACGCUGCGACUGCCAAAUGGCGACGGAGCAGCAGCCAACGACGAGGUCAAGUCGCCGUUUCUAAUCGGCGUCGCCGGCGGAACGGCCAGCGGC ((((..(((((((.((((..(((((..(((((....))))..)..))))).(((........)))...)))).)))))))))))...(((((.(((......))).))))) ( -46.50) >DroPse_CAF1 37781 108 + 1 GACUCCAACAAAGAAGAUAUCCUGCGCCUGCCGAACGGCGAUG---GUCUGACCGGAGAUGAGGUUAAGUCGCCGUUUUUGAUUGGCGUGGCAGGAGGCACGGCUAGCGGC ....((.............((((((.(.((((((((((((((.---...(((((........))))).))))))))......)))))).))))))).((.......)))). ( -37.90) >DroSim_CAF1 7 111 + 1 GAUUUGAGGAACGCCGACACGCUGCGCCUGCCAAAUGGCGACGGAGCAGCAGCCAACGACGAGGUGAAGUCGCCGUUUCUGAUCGGCGUGGCCGGCGGAACGGCCAGCGGC ((((..(((((((.((((..(((((.((((((....))))..)).))))).(((........)))...)))).))))))))))).((.((((((......))))))))... ( -51.50) >DroYak_CAF1 7 111 + 1 GAUUUGAGGAACGCCGACACGCUGCGACUGCCAAACGGCGACGGAGCAGCGGCCAACGAUGAGGUCAAGUCGCCGUUCCUGAUCGGCGUGGCCGGCGGUACGGCCAGCGGC ((((..(((((((.((((..(((((..(((((....))))..)..)))))((((........))))..)))).))))))))))).((.((((((......))))))))... ( -55.40) >DroAna_CAF1 88 108 + 1 GACCUGAAGCAACCGGACUCCUUGCGCCUGCCGAAUGGUGACG---CAUCCGCUGGGGAGGAAGUCAAGUCACCGUUCCUCAUCGGCGUGGCCGGAGGCACCGCCAGUGGC ........((..((((.((....(((((((..(((((((((((---(.(((........))).))...))))))))))..))..)))))))))))..)).(((....))). ( -40.20) >DroPer_CAF1 37408 108 + 1 GACUCCAACAAAGAAGAUAUUCUGCGCCUGCCGAACGGCGAAG---CUCUGACCGGAGAUGAGGUUAAGUCGCCGUUUUUGAUUGGCGUGGCUGGAGGCACGGCCAGCGGC ....((.....((((....))))(((((..(.(((((((((..---...(((((........)))))..)))))))))..)...))).((((((......)))))))))). ( -38.70) >consensus GACUUGAAGAAAGCCGACACGCUGCGCCUGCCAAACGGCGACG___CAGCGGCCAACGAUGAGGUCAAGUCGCCGUUUCUGAUCGGCGUGGCCGGAGGCACGGCCAGCGGC .....................((((....(((((((((((((.........(((........)))...))))))))))......))).((((((......)))))))))). (-32.01 = -30.97 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:52 2006