Locus 7515

Sequence ID 3R_DroMel_CAF1
Location 20,096,913 – 20,097,029
Length 116
Max. P 0.555135
window12138

overview

Window 8

Location 20,096,913 – 20,097,029
Length 116
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 87.23
Mean single sequence MFE -35.88
Consensus MFE -25.77
Energy contribution -27.65
Covariance contribution 1.88
Combinations/Pair 1.06
Mean z-score -1.48
Structure conservation index 0.72
SVM decision value 0.04
SVM RNA-class probability 0.555135
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20096913 116 - 27905053
GCGUGCUUGUUGUUGUUUCGGUGCCGUUGCUUUUCGAAGUCGAAAAUCCAAAAGUGGAUUGU-UGUGGAU--UUGAUUUCAGUUCGACUCGACUCUCCAACGCGACGGUACGCGAUUCG
..............(..(((((((((((((.((..((((((((.((((((....))))))..-.((.((.--(((....))).)).)))))))).)).)).)))))))))).)))..). ( -38.90)
>DroSec_CAF1 20914 116 - 1
GCGUGCUUGUUGUUGUUUCGAUGCCGUUGCUUUUCGAAAUCGAAAAUCCAAAAGUGGAUUGU-UGUGGAU--UUGAUUUCAGUUCGACUCGACUCUCCAACGCGACGGUACGCGAUUCG
(((((((.(((((...((((((..((........))..))))))((((((....))))))((-((..((.--((((..((.....)).)))).))..))))))))))))))))...... ( -36.30)
>DroSim_CAF1 19663 116 - 1
GCGUGCUUGUUGUUGUUUCGAUGCCGUUGCUUUUCGAAAUCGAAAAUCCAAAAGUGGAUUGU-UGUGGAU--UUGAUUUCAGUUCGACUCGACUCUCCAACGCGACGGUACGCGAUUCG
(((((((.(((((...((((((..((........))..))))))((((((....))))))((-((..((.--((((..((.....)).)))).))..))))))))))))))))...... ( -36.30)
>DroYak_CAF1 18555 107 - 1
--------GUUGUUGUUUCUGAGCCGUUGCUUUUCGAAUUCGAA----CAAAAGUGGAUUGUUUGUUGACAAGCGGUUUCAGUUCGACUCGAUCUACCAACGCGACGGUACGCGGUUCG
--------............(((((((((....((((..(((((----(......((((((((((....))))))))))..)))))).)))).....))))(((......)))))))). ( -32.00)
>consensus
GCGUGCUUGUUGUUGUUUCGAUGCCGUUGCUUUUCGAAAUCGAAAAUCCAAAAGUGGAUUGU_UGUGGAU__UUGAUUUCAGUUCGACUCGACUCUCCAACGCGACGGUACGCGAUUCG
..............(..(((((((((((((((((((....))))))........((((..((..((.((...(((....))).)).))...))..))))..)))))))))).)))..). (-25.77 = -27.65 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:50 2006