Locus 7512

Sequence ID 3R_DroMel_CAF1
Location 20,070,428 – 20,070,528
Length 100
Max. P 0.510046
window12132

overview

Window 2

Location 20,070,428 – 20,070,528
Length 100
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.29
Mean single sequence MFE -38.07
Consensus MFE -23.03
Energy contribution -23.73
Covariance contribution 0.70
Combinations/Pair 1.32
Mean z-score -1.46
Structure conservation index 0.61
SVM decision value -0.05
SVM RNA-class probability 0.510046
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20070428 100 - 27905053
----ACCGCUGUGGUCUGCUGGG---CGCUACUUUUGCGGACUACUUCCUUCCAGCCAUCGACUUCGGUGCGCUUUGCAGGAUUCAAAGUGGUGGCACU---CGCAGUUU-
----(((((((((((((((.((.---.....))...))))))))).((((.(.((((((((....))))).)))..).)))).....)))))).((...---.)).....- ( -36.60)
>DroGri_CAF1 18940 98 - 1
----ACAAUUGUUGUUUGUUGGG---CGCUACUUUUGCGGACCACCUCCUUCCAGCCAUCGACUUCGCUGCGCUUGGCGGCUUGCG---UUGCGCCAGC---CGCUGAGCU
----......((((...((((((---.((.......))(((.....))).))))))...))))........(((..((((((.(((---...))).)))---)))..))). ( -37.80)
>DroSec_CAF1 12591 100 - 1
----ACCGCUGUGGUCUGCUGGG---CGCUGCUCUUGCGGACUACUUCCUUCCAGCCAUCGACUUCGGUUCGCUUCGCAGGAUUCAAACUUGUGGCACU---CGCAGCUU-
----...((((((((((((.(((---(...))))..))))))............(((..((((....).)))....(((((.......))))))))...---))))))..- ( -34.20)
>DroEre_CAF1 15228 103 - 1
----ACCGCUGUGGUCUGCUGGGCGGCGCUGCUCUUGCGGACUACUUCCUUCCAGCCAUCAACUUCGGUGCGCUUUGCAGGAUUCAAACUGGUCGCACU---CGCGGCUU-
----......(((((((((.(((((....)))))..))))))))).((((.(.(((((((......)))).)))..).))))........((((((...---.)))))).- ( -38.40)
>DroYak_CAF1 13037 100 - 1
----ACCGCUGUGGUCUGCUGGG---CGCUGCUCUUGCGGACUACUUCCUUCCAACCAUCGACUUCGGUGCGCUUCGCAGGAUUCAAACUGGUGGCACU---CGCGGCUU-
----.((((.(((((((((.(((---(...))))..)))))))))...........(((((....))))).(((.(.(((........)))).)))...---.))))...- ( -36.10)
>DroAna_CAF1 16120 107 - 1
GGUGACUGCGGUAGUUUGCUGGG---UGCUGCUCUUGCGAACCACUUCCUUCCAGCCAUCGACUUCGGUGCGCUUGGCCGGAUUCAGGCUGGAGACGCUGCUGGUGGCCG-
(((.((((((((.((((((.(((---.....)))..)))))).......((((((((...((.((((((.......)))))).)).))))))))..))))).))).))).- ( -45.30)
>consensus
____ACCGCUGUGGUCUGCUGGG___CGCUGCUCUUGCGGACUACUUCCUUCCAGCCAUCGACUUCGGUGCGCUUCGCAGGAUUCAAACUGGUGGCACU___CGCGGCUU_
.....((((.(((((((((.(((........)))..))))))))).((((...((((((((....))))).)))....)))).....................)))).... (-23.03 = -23.73 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:44 2006