Locus 7511

Sequence ID 3R_DroMel_CAF1
Location 20,068,402 – 20,068,494
Length 92
Max. P 0.566028
window12131

overview

Window 1

Location 20,068,402 – 20,068,494
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 78.04
Mean single sequence MFE -30.63
Consensus MFE -19.99
Energy contribution -19.25
Covariance contribution -0.74
Combinations/Pair 1.60
Mean z-score -1.24
Structure conservation index 0.65
SVM decision value 0.06
SVM RNA-class probability 0.566028
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20068402 92 - 27905053
GAAUCUAUUUCGAUAGUCUUGUCCAAACUCACGGUGGUCGCAACUGCUAACUGGUUCUGCACUAGAAAUUGUUGCUGGGCUGUUGCGACCUG
(((.....)))((((....))))............(((((((((.((...(..((...(((........))).))..))).))))))))).. ( -23.70)
>DroSim_CAF1 12516 92 - 1
GAAUCUAUCUCGAUAGUCUUGUCCAAACUCACGGUGGUCGCAACUGCUAACUGGUUCUGCACUAGAACUUGUUGCUGGGCUGUUGCGACCUG
....((((....))))...................(((((((((.((((((.(((((((...))))))).)))....))).))))))))).. ( -27.90)
>DroEre_CAF1 13187 92 - 1
GAAUCUAUCUCAAUAGUCUUAUCCAAACUCACGGUGGUCGAAACGGUUAACUGGUUCUGGAGUUGGGCUUGUUGCUGCGCUGUUGCGACCUG
...................................(((((.((((((((((.(((((.......))))).))))....)))))).))))).. ( -20.60)
>DroWil_CAF1 10307 92 - 1
GAAUCAAUCUCAAUGGUCUUAUCGACACUGGCAGCUGCGGCCACAGCCAAUUGAUUCUGCAGUUGCGCCUGUUGCUGAGCAGCUGCCGUUGC
..........((((.(((.....)))...((((((((((((.(((((((((((......)))))).).)))).)))..))))))))))))). ( -36.10)
>DroYak_CAF1 10996 92 - 1
GAAUCUAUCUCGAUAGUCUUGUCCACACUCACGGUGGUCGCAACGGCUAGCUGGUUCUGCAGUUGGGCUUGUUGCUGGGCUGUUGCGACCUG
....((((....))))...................((((((((((((((((.(((((.......)))))....))).))))))))))))).. ( -32.70)
>DroAna_CAF1 14118 92 - 1
GAGUCAAUCUCGAUGGUCUUGUCCACGCUGACUGGCGUGGCCACAGCCAGUUGGUUCUGUAGCUGGGCCUGCUGCUGAGCUGCGGCAACCUG
(((.....)))..((((..((.(((((((....))))))).))..))))...((((((((((((.(((.....))).)))))))).)))).. ( -42.80)
>consensus
GAAUCUAUCUCGAUAGUCUUGUCCAAACUCACGGUGGUCGCAACAGCUAACUGGUUCUGCAGUUGGGCUUGUUGCUGGGCUGUUGCGACCUG
...................................(((((((((.((((((.(((((.......))))).))))....)).))))))))).. (-19.99 = -19.25 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:43 2006