Locus 7510

Sequence ID 3R_DroMel_CAF1
Location 20,067,800 – 20,067,903
Length 103
Max. P 0.525331
window12130

overview

Window 0

Location 20,067,800 – 20,067,903
Length 103
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 79.11
Mean single sequence MFE -36.10
Consensus MFE -22.81
Energy contribution -23.26
Covariance contribution 0.45
Combinations/Pair 1.21
Mean z-score -1.34
Structure conservation index 0.63
SVM decision value -0.02
SVM RNA-class probability 0.525331
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20067800 103 - 27905053
--UGCAGGUUAAAGUGUUUUUGCUUGAG------------UGGAAUUGCCUGAACACCAACAACAGGAGCUCCUGCCGGCACCUGGCCGCUUCGCUGAAGCAAUAGCUCUUGAGCCA
--....((((.(((.(((.((((((.((------------((((...................((((....)))).((((.....)))).)))))).)))))).))).))).)))). ( -36.40)
>DroVir_CAF1 14896 114 - 1
CCUGCAAGUUAAAGUGUUUCUGCUUUAGACUUUGGGGAAUGGGCAUUGCCUGAACACCAACAACAGGACCGACGGCGGGUGA-UUGCCGCU--GCUGCAGCAACAACUCUUGCGCCA
...(((((......((((.((((..(((...((((.....((((...)))).....))))............((((((....-))))))))--)..)))).))))...))))).... ( -32.70)
>DroSim_CAF1 11912 103 - 1
--UGCAGGUUAAAGUGUUUUUGCUUGAG------------UGGAAUUGCUUGAACACCCACAACAGGAGCUCCUGCCGGCACCUGGCCGCUUCGCUGAAGCAAUAGCUCCUGAGCCA
--....((((...((((((..((.....------------.......))..))))))......((((((((...(((((...))))).(((((...)))))...)))))))))))). ( -37.10)
>DroEre_CAF1 12629 103 - 1
--UGCAGGUUAAAAUGUUUUUGCUUGAG------------AGGAAGUGCUUGAACACCCACAACAGGAGCUCCUGCCGGCACCUGGCCACUUCGCUGAAGCAACAGCUCUUGAGCCA
--....((((.....(((.((((((.((------------..((((((((((........)))((((.(((......))).))))).)))))).)).)))))).))).....)))). ( -33.00)
>DroYak_CAF1 10407 103 - 1
--UGCAGGUUAAAGUGCUUUUGCUUAAG------------AGGAAGUGCCUGAACACCCACAACAGGAGCUCCUGCCGGCAUCUGGCCGCUUCGCUGAAGCAACAGCUCUUGAGCCA
--....((((.(((.(((.((((((.((------------..((((((((.((...((.....((((....))))..))..)).)).)))))).)).)))))).))).))).)))). ( -37.50)
>DroAna_CAF1 13523 102 - 1
CCUGCAGAUUGAAGUGUUUCUGCUUGAG------------GGGCAGGGCCUGAACACCCACAACGGGAGU---GGUGGGCAGCUGGCCAACGCGCUGAUGCAGAAGCUCCUGGGCCA
.(((((......(((((..(((((....------------.)))))((((.(....(((((.((....))---.)))))...).))))...)))))..)))))..(((....))).. ( -39.90)
>consensus
__UGCAGGUUAAAGUGUUUUUGCUUGAG____________AGGAAGUGCCUGAACACCCACAACAGGAGCUCCUGCCGGCACCUGGCCGCUUCGCUGAAGCAACAGCUCUUGAGCCA
......((((...((((((..((........................))..))))))......(((((((.......(((.....))).....((....))....))))))))))). (-22.81 = -23.26 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:42 2006