Locus 751

Sequence ID 3R_DroMel_CAF1
Location 2,640,544 – 2,640,642
Length 98
Max. P 0.982304
window1192

overview

Window 2

Location 2,640,544 – 2,640,642
Length 98
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 77.31
Mean single sequence MFE -25.13
Consensus MFE -17.04
Energy contribution -21.57
Covariance contribution 4.53
Combinations/Pair 1.03
Mean z-score -2.18
Structure conservation index 0.68
SVM decision value 1.91
SVM RNA-class probability 0.982304
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2640544 98 - 27905053
GUAAAAUGUAUAUGGGCAACGCUAACAAUGUGGGUUCUUCGAAAACGAUACUUUUAAAUACUGUU--------UU------GUUUACU-------GAUUGCGUAUACGUCACCGCCUUU
.............((((..(((.......)))(((.......((((((.((...........)).--------))------))))...-------....(((....))).))))))).. ( -14.60)
>DroSec_CAF1 40650 119 - 1
UUAAAAUGUAUAUGGGCAAUCAUAACACUGUGGGUUCUUCGAAAACGAUACUUACAAAAAGUAUACGUAUACUUUAUAAAAGUAUACGUAUAAAAGUAUGCGUAUACGUCAACCUCUUU
.....(((((((((.((...........(((((((...(((....))).))))))).....(((((((((((((.....)))))))))))))...))...))))))))).......... ( -31.60)
>DroSim_CAF1 28935 119 - 1
UUAAAAUGUAUAUGGGCAAUCAUAACACUGUGGGUUCUUCGAAAACGAUACUUACAAAAAGUAUACGUAUACUUUAUAAAAGUAUACGUAUAAAAGUAUGCGUAUCCGUCAUCCUCUUU
.....((((((((...............(((((((...(((....))).))))))).....(((((((((((((.....)))))))))))))...))))))))................ ( -29.20)
>consensus
UUAAAAUGUAUAUGGGCAAUCAUAACACUGUGGGUUCUUCGAAAACGAUACUUACAAAAAGUAUACGUAUACUUUAUAAAAGUAUACGUAUAAAAGUAUGCGUAUACGUCAACCUCUUU
.....(((((((((..............(((((((...(((....))).))))))).....(((((((((((((.....)))))))))))))........))))))))).......... (-17.04 = -21.57 +   4.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:06 2006